Paraburkholderia caribensis: K788_0006638
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Entry
K788_0006638 CDS
T04141
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03030
DNA replication
bcai03430
Mismatch repair
bcai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K788_0006638
03430 Mismatch repair
K788_0006638
03440 Homologous recombination
K788_0006638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcai03032
]
K788_0006638
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0006638
Enzymes [BR:
bcai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K788_0006638
DNA replication proteins [BR:
bcai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K788_0006638
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K788_0006638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
ALL64571
UniProt:
A0A0P0R941
LinkDB
All DBs
Position
1:1894727..1898296
Genome browser
AA seq
1189 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRIDDVVASAAKDGQGALALTDLGNAFGLVRFYQEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKNKTGYLNLCELLSKAWLTNQYRGRAEVE
PAWLEGGLAEGLLALSGAQHGDVGLALAAGNEEAARRNAQRWAVIFPNGFYIELQRGGQP
GAQAYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTT
DQYFRTQAEMVEMFADIPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEKRLEQLFPEQDKRDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAK
HREIFAEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCIANKMAVLPPDINMSAYRFEPVAEADGKRSRTIRYGLG
AIKGSGQNAIEEILRAREEGKFVDLFDFCNRIDRRVVNRRTIEALIRAGAFDSLHENRAQ
LIASVSLAMEAADQASANAMQAGLFDMGDAPSQGHELIDEPAWPEKRRLQEEKTALGFYM
SGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQC
EVTVFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRYAQAVKV
QMNGNANALVLRSVLEAYRAKPEDAEVAAPAPAARGGGRGGFGGNGDSGGRGQRQSAPMP
NGLAVQIVYRSDNAEGEVRLGDAWRVRPTDELLAALRSEFSGSAIEIVY
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgatt
gccgatggcatcgtgcgtatcgacgacgtcgtcgcttccgctgccaaagacggtcagggc
gcgctcgcgctcaccgatctcggcaatgcattcggtctcgtccgtttctatcaggaagcc
cgtggcaaaggggtcaaacccattgccggctgcgacgtctggatcacgaatcccgacgac
cgcgacaagccttcgcggcttctgttgctggtcaagaacaagaccggctatctgaatctt
tgcgaactgctgtcgaaggcatggctgacgaatcagtatcgcgggcgcgcggaagtggaa
ccggcgtggctcgaaggcggcctcgccgaagggctgctcgcgctgtcgggtgcgcagcat
ggcgacgtcggcctggcgctcgcggcaggcaacgaggaagccgcgaggcgcaacgcacag
cgctgggcggtgatcttcccgaacggtttctatatcgaactgcagcgcggcggccagccc
ggtgcgcaggcgtatgtgcagcaggcggtcgcgctcgcagcgtcgctgaagctgcccgtg
gtcgccacgcatccgctgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgc
gtgtgtatttcggaaggcgacatgctcgcgaatccgcgtcgccagaagcgcttcacgaca
gaccagtatttccgcacgcaggccgagatggtcgagatgttcgccgacattccgtcggcg
gtggccaacaccatcgaaatcgcgaagcgctgcaatctgacgctcgaactcggcaagccg
aagctgccgctgttcccgacgccggacggcatgtcgctcgacgactacctggtgcagctg
tcgaaggaaggcctggaaaagcgtctcgagcaactgttcccggagcaggacaaacgcgac
gcgcagcgcgaaacgtattacgcgcggctcgacttcgaatgcggcacgatcatcaagatg
ggctttcccggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggc
gtgcccgtggggccaggccggggttcgggcgcgggctcgctggtcgcctacgcgctcggc
attaccgacctcgatccgctgcgctacaacctgctgttcgaacgttttctgaatccggag
cgggtgtcgatgcccgacttcgatatcgacttctgtcagcacggccgcgatcgcgtgatc
cagtacgtgaaggagaagtacggcgcggacgccgtgtcgcagatcgccaccttcggcacg
atggccgcgaaggccgccgtgcgcgatatcggccgcgtgctcgatctcggctacatgttc
acggacggggtcgcgaagctgattccgttcaagcccggcaagcacgtcaccatcgccgac
gcgatgaaggaagagccgctgctgcaggaacgcttcgacaacgaagacgaagtgcatcag
ctgctcgaactcgcgcagcgcgtggaaggcctgacgcgtaacgtgggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctgacggatttctgtccgctttatacgcagggcgac
gaaagcggcgtcgtgagccagtatgacaaggacgacgtcgaagccgtcggcctcgtcaag
ttcgactttttgggcctgaccacgctgaccattctcgactgggccgagcgctatattcgg
cgtctcgatccgtcgaaggaaaactggtcgctcgcgcaggtgccgctcgacgacccggcg
tcgttctcgatcctcaagaaagcgaacacggtcgccgtgttccagctggaaagccgcggc
atgcaaggcatgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtg
gcgttgtatcgtccgggcccgatggacctgattccgagcttctgcgcgcgtaagcacggc
cgcgaagtggtggagtatccggacccgcgcgtcgaacctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctg
ggtggcgccgacctgctgcgtcgcgcgatgggcaagaagaagcccgaggaaatggcgaag
caccgcgagatcttcgcggagggcgcggcgaagaacggcctgacacgcgagaaggccgac
gagaccttcgacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggct
gcctatgcgctgctcgcgtaccacaccgcgtggctcaaggcgcaccatcccgccgaattc
atggcggccaatatgtcgctcgcgatggacgacacggacaaggtcaagatcctgttcgaa
gactgcatcgcgaacaagatggccgtgctgccgccggacatcaacatgtccgcgtaccgc
ttcgagcctgtcgcggaagccgacggcaagcgttcgcgcacgatccgctacggtctcggc
gcgatcaagggcagcggccagaacgcgatcgaagaaatcctgcgcgcgcgcgaggaaggc
aagttcgtcgatctgttcgatttctgcaatcggatcgatcgccgcgtcgtcaatcgccgc
acgatcgaagcgctgattcgcgcaggcgcattcgattccttgcacgagaaccgcgcgcaa
ctgatcgcgtcggtgtcgctggccatggaagccgcggatcaggcgagcgccaacgcgatg
caggcgggcctgttcgatatgggcgacgcgccgtcgcaaggccatgaactgatcgacgaa
cccgcatggccggaaaagcgccgtctgcaggaagagaagacggcgctcggcttctacatg
tcgggccatctgttcgatgcctacaaggacgaagtgcgccgcttcgtgcgtcagaagatc
ggcgaactgaaagaagggcgtgacaagctggtggcgggcgtgatcgtgtcgctgcgtacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgc
gaagtgaccgtcttcaacgagcaattcgaggcgcacaagcagttgttcaaggaagacgaa
ctgcttgtcgtccaaggccaggcgcgcaatgacgcgttcaccggcggcatccgcttcacc
gtcgatacaccgatggacctcggccgcgctcgcacgcgttacgcgcaagcggtgaaggtg
cagatgaacggcaacgcgaatgcgctggtgctgcgctccgtgctcgaagcctatcgcgcg
aagccggaagatgcggaagtggctgcgccggcgcccgctgcgcgaggcggcgggcgtggc
ggcttcggcggcaacggcgattcgggcgggcgcgggcagcggcaatccgcgccgatgccg
aacggccttgccgtgcagatcgtctatcgcagcgacaacgcggaaggcgaggtgcggctt
ggcgatgcatggcgcgtgaggccgacggacgaactgctcgccgcattgcgcagcgagttt
tcgggcagcgcgatcgagatcgtgtattga
DBGET
integrated database retrieval system
