Paraburkholderia caribensis: K788_0006766
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Entry
K788_0006766 CDS
T04141
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K788_0006766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcai03019
]
K788_0006766
Enzymes [BR:
bcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K788_0006766
Messenger RNA biogenesis [BR:
bcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K788_0006766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALL63014
UniProt:
A0A0P0R4N1
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All DBs
Position
1:282706..284241
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AA seq
511 aa
AA seq
DB search
MSFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKREMLTHLI
KQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI
EKLIKRAVPQEVIPGFEPDPNARPEPILRRGQGGGGGGRQPRQGQGQGQRQAQGQQKREG
SANANNGASRGGQRASGDKPKQQQAKPQGSKPAQARTDGSRHQDNKPRAVAHEGNARAPH
APRKPHGANPGALLGGGKPRSGAPRGGQRGN
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcttgtccgaacagctggtccgcgcagtcaacgaactcggc
tatacatcgccgactccgatccagcagcaagccattcccgccgtgctcaacggcggcgat
ctgttggccggcgcccagacgggcacgggcaaaacggctggcttcacgctgcccatcctg
caacgtcttctcaccatgccgcccgcgcccggcggcaagcgcgtcgtacgcgcgctgatc
ctcacgccgacgcgtgaactggccgcacaggtcgaggaaagcgtgcgcgcttacggcaag
tatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcagatcgac
gcgttgcggcgcggcgtcgatatcgtcgtggcgacgcctgggcgtctgctcgaccacatg
cagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagccgaccgc
atgctcgacatgggcttcattcacgacatcaagcgcgtgctcgccaagctgccgccgaag
cgccagaacctgctgttctcggccaccttctcggacgaaatcaaggcgctcgccgacaac
ctgctcgactcacccgcgctgatcgaggtcgcacgccgcaatacgacagccgaatcggtc
gcgcaaaagattcaccctgtcgaccgtgaccgcaagcgcgagatgctcacgcatctgatc
aagcagcacaactggtttcaggtgctcgtgttcacgcgcaccaagcatggcgcgaaccgt
ctcgccgaacagctgacgaaggacggcatcagcgcgctcgcgatccacggcaacaagagc
cagtcggcccgcacccgcgcgctggccgagttcaagaacaacacgctgcaggtgctcgtc
gccaccgacatcgcggcgcgcggcatcgatatcgaccagttgccgcacgtcgtcaacttc
gatctgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgcgcgggc
gcgacgggcgaggcggtgtcgctggtgtgtgtcgatgagcttcaactgctgaaggacatc
gagaagctgatcaagcgcgccgtgccgcaggaggtgatcccgggcttcgagccggacccg
aatgcacggcccgagccgattctgcgccgtggtcaaggcggcggcggtggcggccgtcag
ccgcgccaaggtcagggtcaagggcagcggcaagctcaggggcagcaaaagcgcgaaggc
tcggccaacgcgaacaatggcgcatcgcgcggcggccaacgcgcttcgggcgacaagccg
aagcagcagcaagccaagccgcaaggttcgaagcctgcgcaggcgcgcactgatggctcg
cgtcatcaggacaacaagccgcgtgccgtcgcacatgaaggcaacgcgcgcgctccgcac
gcaccgcgcaagccgcacggcgccaatccgggtgcattgctcggcggcggcaagccgcgc
tccggcgcgccccgcggcggtcagcgcggcaactga
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