Paraburkholderia caribensis: K788_0007711
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Entry
K788_0007711 CDS
T04141
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K788_0007711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcai03021
]
K788_0007711
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0007711
Enzymes [BR:
bcai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K788_0007711
Transcription machinery [BR:
bcai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K788_0007711
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K788_0007711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
ALL63781
UniProt:
A0A0N7JTJ4
LinkDB
All DBs
Position
1:1084180..1088421
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRSELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNQTR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLFESGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGDEVKIPNSEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQISDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKTKEM
ADRERFDQIAAEEAFEFGTPETPAAEQTPHTNE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgggatggtctgttctgcgcgaag
attttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgcgaa
cgcatgggccacatcgaactggcctcgcctgtcgcgcacatctggttcttgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatatgtggtgatcgatccgggcatgacgccgctgaaggcgcgtcagatcatg
acggaagaggattactacaataaggtcgaagagtacggtgacgaattccgcgctgaaatg
ggcgcggaaggcgtgcgcgaactgctgcgtgcgatcaacatcgacgagcaggtcgaaacg
ctgcgctcggagctgaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgt
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcctgagtggatgattctcgaa
gtgctgccggtgctgccgcccgaactgcgtccgctggttccgctggacggaggccgtttc
gcgacttcggacctgaacgacctgtatcgccgggtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggccgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctggaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacattctcgaagaagtcattcgcgaacatccg
gtgatgctgaaccgcgcgccgacgctgcaccgtcttggcattcaggctttcgagccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgttccgctgtcgcttgaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtattacgcgacgcgcgaagcgatcaacggc
aagggcgaaggcctgacgttcacgggcgtgtcggaagcgctgcgcgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccataacgaagac
aagtcggaaggtgcgccggcgttcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgttcgatcctgtcggaaattctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcattccgcaagtgcggtctgcgt
gaaacggtaattttcgccgatcagttgatgcagtcaggcttccgcctggccacgcgcgct
ggtatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggagaccatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacctcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggaaccggtcgtggatcgcgacggcaaccagacgcgt
caggagtcgttcaactccatctacatgatggccgactcgggtgcgcgtggttcggcagtt
cagatccgtcagctcgctggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgtgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagacggcaaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgtcgtggtcgaagacgattgcggt
acgtcgaacggcgtggcaatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcactg
cgtgaccgtattctgggtcgcgttgcggtggctgacgtcgtcaatccggaaacgcaggaa
acgctgttcgaatcgggcacgctgctcgacgaagacgcggtcgaagaaatcgaacgcctc
ggtatcgacgaagtgcgcgtgcgtacgccgctgacttgcgaaacgcgttacggtctgtgc
gcagcctgctacggccgcgacctgggccgcggctcgtcggtcaacgtcggcgaagctgtc
ggcgtgatcgctgctcagtcgatcggtgaaccgggcacgcagctgaccatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcgtcgtcggtcgaagcgaagtcgaac
ggtacggtgcgtttcacgtcgacgatgcgttacgtgacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgatcaccgacgatcacggccgcgagcgcgagcgt
cacaaggtgccgtacggcgcgacgctgctgcaactcgacggcgcgcagatcaaggcgggc
acgcaactggccacgtgggatccgctgacgcgtccgatcatcaccgagtggggcggtacg
gtgaagttcgaaaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacg
ggtctgtccactctcgtcgtgatcgacgtgaagcgccgcggttcgcaggcttcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgacgaagtcaagatcccgaactcg
gagcactcggttcagatcggcttccaggtcggcgcactgatcaccgtgaaggatggtcag
caggttcaggtgggtgaagtgctcgcacgtatcccgactgaagcgcagaagacgcgtgac
attacgggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgca
ggtatcctggcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaagtcgtcaacaagggcgaaatgatcgtcgacgggccg
gcggatccgcacgacatcctgcgtttgcagggtatcgaagcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgtgcgtcagatgctgcgtcgcgtgcagatcagcgacaacggcgatacgcgcttc
atcccgggtgagcaggtcgagcgttcggacatgctggacgaaaacgatcgcatgatcgcg
gaagacaagcgtccggcaacgtacgagaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgacggaa
gcggcgatcatgggcaagcgcgacgatctgcgtggcctgaaggaaaacgtgatcgtcggt
cgtctgattccggctggtacgggtctcgcgttccacaaggcacgcaagaccaaggaaatg
gcggatcgcgagcgtttcgaccagatcgcagcagaagaggccttcgagttcggtacgccg
gaaaccccggccgccgagcaaacgccgcacaccaacgaataa
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