Bacillus caldolyticus: CWI35_08410
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Entry
CWI35_08410 CDS
T08314
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bcal
Bacillus caldolyticus
Brite
KEGG Orthology (KO) [BR:
bcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bcal03009
]
CWI35_08410
Enzymes [BR:
bcal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CWI35_08410
Ribosome biogenesis [BR:
bcal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CWI35_08410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
Cons_hypoth95
MTS
Methyltransf_11
RrnaAD
PCMT
Methyltransf_12
Methyltransf_32
N6_N4_Mtase
Methyltransf_23
TPMT
Motif
Other DBs
NCBI-ProteinID:
AUI36540
LinkDB
All DBs
Position
complement(1607856..1609229)
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AA seq
457 aa
AA seq
DB search
MTKQQAPVAKNEYYDVVFTDLTHDGLGVAKVDGFPLFVKNALPGERANVKVVKVKKGYGY
GRLIELYEPSPDRIEPPCPVYRQCGGCQLQHLSYEGQLKAKEKQVKEVLARIGKLDGVTV
HPVIGMKNPWRYRNKAQVPVGEREGGLVAGFYKERSHEIIDMDACLIQQEKNDDVVQAVK
RIVERYGIPSYDELAHRGVLRHIVARYGAATGEVMVVLVTRTNHLPHEQEIVRSIVREIP
DVTSIVQNINPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPEQTKVLYD
KALEYAELTGRETVIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKLNGIQNV
TFEVGAAEDVIPRWYQEGIRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLA
RDLRILEDGGYETIEVQPVDMFPHTAHVECVAKIRLR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcagcaagcaccagtcgccaaaaatgaatattatgacgtcgtattcacggat
ttgacccacgacggtctcggagtggcgaaagtcgacggctttcccttgttcgtgaaaaac
gcgcttcccggggagcgggcgaacgtaaaagtcgtcaaagtgaaaaaaggctacgggtac
ggccggcttatcgagctgtacgaaccgagccccgaccgcatcgagcccccgtgccctgtc
tatcgtcaatgcggcggctgccagctgcagcacctgagctacgaagggcagctgaaggcg
aaagagaagcaagtgaaagaagtgctcgcccgcatcggcaagcttgacggcgtcaccgtc
catcccgtcatcgggatgaagaacccatggcgctaccgcaacaaggcgcaagtgccggtc
ggcgagcgcgaagggggcttggtcgcgggcttttacaaagaacggagccatgagattatc
gatatggatgcctgtctcattcaacaagagaaaaacgatgacgtcgtccaagcggtgaaa
cggatcgtcgagcgctacggcatcccgtcatacgatgaactcgcccatcgcggcgtgctc
cgccatattgtcgcccgctacggcgcggcaacaggcgaggtgatggtcgtgcttgtcact
cgcacgaaccatttgccgcatgaacaagagatcgttcgctccatcgtccgtgaaatcccg
gacgtgacatcgatcgtgcaaaacatcaaccccgagcggacgaacgtcattttcggcgcc
aaaacgcgggtgttatggggaagcgagttcatcaccgaccgcatcggcggcattcaattc
gccatctcggcccgctcgttttaccaagtcaaccccgaacagacgaaagtgctgtatgac
aaagcgctcgaatacgcggagctgaccgggcgggagacggtgatcgacgcctactgcggc
atcggcacgatctcgctctttttggcgcgtaaagcgaaacacgtctacggcgtcgaaatc
gtccccgaagcgatcgaagacgccaagcgcaacgccaaactcaacggcatccaaaacgtc
accttcgaagtcggcgccgccgaagacgtcatcccgcgttggtatcaagaaggcatccgc
gccgactgcttggtcgttgacccgccgcgcaaaggctgtgacgccgcgctgcttgagacg
atcatcgccatgaaaccgccgcgcgtcgtctacgtctcgtgtaacccggcgacgctcgcc
cgcgacttgcgcatcctagaagacggcggctacgaaacgatcgaagtccagccagtggac
atgtttccgcacacggcgcatgtggagtgtgtggcgaaaattcggttgagataa
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