Bacillus caldolyticus: CWI35_09900
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Entry
CWI35_09900 CDS
T08314
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcal
Bacillus caldolyticus
Pathway
bcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWI35_09900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcal03021
]
CWI35_09900 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcal03400
]
CWI35_09900 (rpoC)
Enzymes [BR:
bcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWI35_09900 (rpoC)
Transcription machinery [BR:
bcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWI35_09900 (rpoC)
DNA repair and recombination proteins [BR:
bcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWI35_09900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AUI36780
LinkDB
All DBs
Position
complement(1898524..1902123)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLDKEVAALKEELKTAQGQRRARIIKRLEVLEAFRSSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAIH
AGSLKNETFTEEQNNKLLLTTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGV
NVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVISIWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVVVKLE
ERLVGRYAHKTVRHPETGEVIVRKDEMITEDIANEIIKAGITEVWIRSVFACNTRHGVCK
KCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGTVISINETRDNQYEIVVQSEVETRTYVAPYNARLKVEEGQRVER
GQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPAVKKETASDTVSSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtcaataagtttgagtacatgaaaattgggctcgcttccccggagaaaatt
cgttcttggtcatatggcgaagtcaaaaagccggagacaatcaactatcggacgttaaag
ccggaaaaagacggcttgttttgcgagcgcattttcggtccgacgaaagactgggaatgc
cattgcggcaaatataaacgcgttcgctacaaaggcgtcgtctgcgaccgctgcggcgtc
gaagtgacgcgctcgaaagtccgccgcgaacggatgggccatattgagctcgccgccccg
gtttcgcacatctggtatttcaaaggcatcccgagccggatgggattggttcttgacatg
tcgccgcgggcgctcgaagaggtcatttattttgcatcctatgtcgtcaccgacccgggt
gatacgccgcttgagaaaaagcagctgttgtcggaaaaggaataccgcgcctatcgcgag
aagtacggtcaatcgttccaagcgtcgatgggggcggaggcgatcaaaaagctgctccaa
gacattgatttggataaagaggtggccgcgctgaaagaagagctgaaaacagcgcaaggg
caacggcgcgcccgcatcattaagcggcttgaagtgcttgaagcgttccgcagttcaggg
aacgatccggcatggatggtgcttgatgtactgccggtcattccaccggagttgcgcccg
atggttcagcttgacggcgggcggtttgcaacatcggatttgaacgatttgtaccgccgc
gtcatcaaccgcaacaaccggctgaaacggctgcttgatctcggtgcgccgaacattatc
gtccaaaatgagaagcgaatgctgcaagaggcggttgatgctttgatcgataacggccgc
cgcggccgtccggtgaccggtccggggaaccgtccgttaaaatcgctttctcatatgctg
aaagggaagcaaggccgcttccggcaaaacttgctcggcaagcgcgtggactattccggc
cgttccgtcatcgtcgtcggcccgaacttgaaaatgtaccaatgcggcttgccgaaagaa
atggcgctagagttgttcaagccgtttgttatgaaggagcttgtcgagcggggcttggcg
cacaacattaaaagcgcgaaacggaaaatcgagcgcgtccatccggaagtatgggatgtg
ctggaagatgtcattaaagaacatccggtgctgttaaaccgcgccccgacgctgcaccgt
ctcggcattcaggcgtttgaaccaacgcttgtggaagggcgggcgatccgtcttcatccg
cttgtttgcacggcgtacaacgctgactttgacggcgaccaaatggcggtgcacgtgcca
ctgtcagctgaggcgcaagccgaagcgcgcttgttgatgttggcggcgcaaaacattttg
aacccgaaagatgggaagccggtcgtgacaccatcacaagacatggtgttgggcaactac
tacttgacgatggagcgcgagggagccatcggcgaaggcatggtgttcaaagacacggac
gaggcgctgcttgcttaccataacggctacgtccatctccattcgcgcattgccattcat
gccggttcgctgaaaaacgaaacgtttaccgaagagcaaaacaacaagttgctcttaacg
accgtcggcaagctcattttcaacgaaattttgccgaattcgttcccgtacatcaacgag
ccgacgacggaaaacattgaagggcggacgccggacaagtacttccttgacaaaggggtc
aacgtgcgcgaagaaattcgcaagcgcgaactcgtgccgccgtttaagaaaaaagtgctc
gggcaaattatcgctgaagtgttcaaacggttcaaaatcaccgaaacatcgaagatgctc
gaccgcatgaaagaccttggcttccaatattcgacgaaggccggcatcacgatcggcgtg
gccgatatcgtcgtcctgccggaaaaacaagaaattttggatgaagcgcaagcgaaagtt
gatacggttttgaagcagttccgccgcgggttgattaccgacgaagagcggtacgagcgc
gtcatctccatctggagcgcggcgaaagacaaaattcaagaccggttgatgaagtcgctt
gataaacgcaacccgatctttatgatgagcgattccggagcgcgcgggaacgcgtcgaac
tttacgcagcttgcggggatgcgcggtttgatggccaacccggccggccggatcattgag
ctgccgatcaagtcgtcgttccgcgaaggcttgacggtgttggaatactttatctcgacg
cacggcgcgcgaaaaggattggcggatacggcgctcaaaacggccgactcaggctatctc
acgcgccgccttgtcgacgtggcccaagacgtcatcgtccgcgaagaagattgcggcacc
gaccgcggcattttggcgcgggcgctgacggatggcacggaagttgtcgtcaagcttgaa
gagcggcttgtcggccgctatgcgcacaaaacggtgcgccatccggaaacgggcgaagtg
atcgtccgcaaagacgagatgatcaccgaagatatcgccaatgagatcattaaagccggc
attacggaagtatggattcgctccgtattcgcctgcaacacgcgccatggcgtctgcaaa
aaatgttacggccgcaacatggcgaccggcatggacgtcgaagttggcgaagccgtcggc
attatcgccgctcagtcgatcggcgagccgggcacgcagctgacaatgcggacgttccat
acaggcggcgtcgccggcgacgatatcactcaaggtttgccgcgggtgcaagagctgttt
gaagcgcgcaacccgaaagggcaagcggtcatttctgaaatcgacggcacggttatttcg
attaatgaaacgcgcgacaaccaatatgaaatcgtcgtgcaaagcgaggtcgaaacgcgt
acgtatgtagcgccgtacaacgcgcggctgaaagtcgaagaaggtcagcgcgtcgaacgc
ggccaagagctgacagaaggctcggtcgacccgaaacagttgttgcgcgtgcgcgatatt
acatccgttcaagagtacttgcttcgtgaagtgcaaaaagtgtaccggatgcaaggggtg
gaaatcagcgataagcatatcgaggtcatggtgcggcaaatgctgcgcaaagtgcgcgtc
atcgatgccggcgacaccgatgtgctgccgggcacgctgttggatgtccaccagtttacg
gatgtcaacgccaaagctcttcgcgaagggaaacggccggcgacggcccgccaggtgttg
ctcggcatcacgaaagcgtcgcttgagacggattcgttcttgtcggctgcttcgttccaa
gaaacgacgcgcgtcttgacggatgcggccatcaaaggaaaacgtgatgaactgcttggc
ttgaaggaaaacgtcattatcggcaaactcgtcccggctggaaccggtatggcccgctac
cggaaagtgaagccggccgtcaaaaaggaaacggctagcgacacggtgtcgtccaaataa
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