Bacillus caldolyticus: CWI35_15985
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Entry
CWI35_15985 CDS
T08314
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcal
Bacillus caldolyticus
Pathway
bcal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWI35_15985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcal03021
]
CWI35_15985
Transcription machinery [BR:
bcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWI35_15985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
DUF2408
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AUI37824
UniProt:
A0ABN5G2L9
LinkDB
All DBs
Position
3086503..3087630
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AA seq
375 aa
AA seq
DB search
MAEKPAQSKQAEAAGESLEQVKEQLAELGKKRGILTYEEIAERLSGFDLDSDQMDEYYEY
LAEQGIEVISESDLEADPDIDDLAKEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVPLLS
AEEEIELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVE
KFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRE
PTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAY
ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK
LRHPSRSKRLKDFLE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccagcccaatcaaagcaggctgaagctgccggcgaatcgcttgaacaa
gtgaaagagcaactcgctgagctcggcaaaaagcgggggatcctcacctatgaggaaatc
gctgagcggttgtctggctttgatttggactccgaccagatggatgagtattatgaatac
ctcgctgagcagggcattgaagtgatcagcgaatccgaccttgaggccgatccggacatc
gacgacttggccaaagaggaagaattcgacttaaatgacttgtccgttcctcccggcgtc
aaaatcaatgacccggtgcgcatgtacttgaaggagatcggccgcgtgccgctgttgtcg
gcggaagaagaaatcgagctggcgaaacggatcgagcaaggcgatgaagaagcgaaacgc
cggctgacggaagcgaacctccgcctcgtcgtcagcatcgccaaacggtatgtcggccgc
ggcatgctctttcttgatttgattcaagaagggaacatggggctgatcaaggcggtcgaa
aagtttgactatcggaaaggctacaagttcagcacgtacgcgacgtggtggatccgccaa
gccatcacaagggcgatcgccgatcaggcgcggacgatccgcatcccggttcatatggtc
gaaacgatcaataaactgatccgcgtccaacggcaattgctccaagacctcgggcgcgaa
ccaacgccggaagaaatcgccgaggaaatggatttgacaccggaaaaagtgcgggaaatt
ttgaaaatcgctcaagaaccggtgtcgctcgagacgccgatcggcgaggaagatgactcg
catcttggcgatttcatcgaagaccaagacgcgacatcgccatccgagcacgctgcttac
gagctgttgaaagagcagctcgaagatgtgcttgatacgctgacggatcgcgaggaaaat
gtgttgcgtctccgcttcgggcttgacgacggacggacgcggacgctcgaagaagtcggc
aaagtgttcggcgtgacgcgcgaacgcatccgtcaaattgaagccaaagcgttgcgcaag
ctgcgccatccaagccgcagcaaacggctgaaagactttttagagtga
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