Bradyrhizobium canariense: BcanWSM471_06040
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Entry
BcanWSM471_06040 CDS
T08760
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcan
Bradyrhizobium canariense
Pathway
bcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BcanWSM471_06040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcan03019
]
BcanWSM471_06040
Enzymes [BR:
bcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BcanWSM471_06040
Messenger RNA biogenesis [BR:
bcan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BcanWSM471_06040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UFW42750
LinkDB
All DBs
Position
complement(1295156..1296697)
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AA seq
513 aa
AA seq
DB search
MRRAPAYDMERTHLLTSFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIA
QTGTGKTASFALPILHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQ
VDFSAKPAFLAQLLKQEQVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRER
TLAQFRTGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAI
SLVAGGEELSYLRDIERLIKVALPREDRRTDAGRRDAGPPPQQQRQGRPGRPGQRPQGAR
HGEGRHADGRRADERHADGRHHSAAKQGDGRPGSGPKAAPRGRSGGKAHSSPNGRPEQRS
AHSAGASDGIQGVAFLRRESRPNGQPTRKPHSH
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttatgacatggaaagaacccatcttttgacttcgtttcaggat
ttcggcctcgccgagcccatcgcccgtgctctcaccgaagagaattacgtcacccccacc
cccatccaggcccagacgattccgaccgcgctgaccggccgcgacgtcgtcggcatcgcc
cagaccggaaccggcaagaccgcgtccttcgcgctgccgatcctgcaccgcctgctcgaa
aatcgcatcaagccgcagccgaagacggcccgcgtcctggtgctgtcgccgacccgcgag
ctgtccggccagatcctcgacagcttcaacgcctatggccgccacatccgcctgtcttcg
acgctcgccatcggcggcgtgccgatgggccgtcaggtccgctcgctgatgcagggcgtc
gaggtgctggtcgccacccccggccgtttgctcgacctcgtgcagagcaacgggctgaag
cttggaagcgtcgaattcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttc
atcaacgacatccgcaaaatcgtcgccaagctgccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctggccgacgccatgctgcgcgaccccgcc
cgcgtcgccgtgaccccggtctcctcgaccgtggagcgcatccagcagcgcatcatccag
gtcgacttctccgccaagccggcgttcctcgctcagctgttgaagcaggagcaggtcaac
cgcgcgctggttttcacccgcaccaagcacggcgcggacaaggtggtgaagacgctcgag
aaggccggcattcccgccagcgctatccacggtaacaagtcgcagaaccatcgcgaacgg
acgcttgcccagttccgcaccggtgaaatccgcacgttggtcgccaccgatatcgccgcc
cgcggcatcgatgtcgacggcatcacccacgtcatcaatttcgacctgcccaacgtgccg
gagacctatgtgcatcggatcggccgcaccgcgcgcgcgggtgccgagggcaccgcgatc
tcgctggtcgcaggcggcgaggagctcagctatctccgcgacatcgagcggctgatcaaa
gtggcgctgccgcgtgaggatcgccgcaccgacgccggccgccgcgatgcgggccctccc
ccgcagcagcaacgacagggtcggccgggccgcccgggccagcgtccgcaaggcgcaaga
catggtgagggacgccacgctgacggccgccgcgccgacgaaaggcatgcggacgggcgc
caccacagtgccgccaagcagggcgacggaaggcccggcagtggcccgaaggcagctcct
cgtggccgctccggaggcaaggcgcattcttcgccaaacggccgtccggaacagcgttcc
gcgcatagcgccggggcgtctgatgggatacaaggcgttgcctttttgcgccgcgagagt
cggccgaatggccaaccgacccgcaaaccccattcgcactag
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