Bradyrhizobium canariense: BcanWSM471_23955
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Entry
BcanWSM471_23955 CDS
T08760
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcan
Bradyrhizobium canariense
Pathway
bcan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BcanWSM471_23955 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcan03021
]
BcanWSM471_23955 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcan03400
]
BcanWSM471_23955 (rpoC)
Enzymes [BR:
bcan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BcanWSM471_23955 (rpoC)
Transcription machinery [BR:
bcan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BcanWSM471_23955 (rpoC)
DNA repair and recombination proteins [BR:
bcan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BcanWSM471_23955 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
UFW39263
LinkDB
All DBs
Position
complement(5140679..5144875)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLELTLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGEMAELEHALH
AKVIHLHTKIKYRWEGIDDTGKISKRWIETTAGRVMLGNLLPKNPRVPYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDVRDSTGKVIFKRGTLMEESHLDAIHQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIA
RNSEGHLVAMVRNMVIAIVDADGTERATHRIQYGSRLHVDEGDMVKRGQRIVEWDPYTRP
LLTEVEGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSMRGGGDLRPAIVIKGKDGKV
LKLARGGDARYMLSVDGILSVDVGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTDEPREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQIDKIEFDQINAKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQA
AVVPPAPEVEPMALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctctttaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgagccccgagaagattctgtcctggtcgtacggcgagatcaag
aagccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcagcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctcgacatgacgttgaaggatctcgagcggatcctc
tacttcgaatattacgtcgtgctcgagccgggcctcaccgcgctgaaggaccgtcagctc
ttgtcggaagacgagtacctgaaggcgcaggacgaatacggccaggattccttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctcaagggcatggatctcgagaagctcgag
ctgaccttgcgcgcggagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggtcccggtgattccgccggacctgcgtccgcttgtgccgctggacggcggc
cgtttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgt
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggcttgacgccaagggtctgtccacgaccgtgaagcaggccaag
aagctggtcgagaaggagcggcccgaggtctgggacatcctggacgaggtcattcgcgag
catccggtgctgctcaaccgcgcaccgacgctgcatcgcctcggcatccaggcgttcgag
cccgtgctgatcgagggcaaggcgatccagctccacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctctatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgagatggcggagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcatcgacgatacc
ggcaagatatccaagcgctggatcgagaccaccgccggccgcgtcatgctgggcaatctg
ctgccgaagaacccgcgtgttccctacgagatcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgaccaggtctaccgccactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcactccaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccatggcgagaagtacaac
aaggtcgtggacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctcgaccaagaagacggcgagcggggcggatgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggctacctgacccgtcgtctcgtcgacgtcgcg
caggattgcatcatcacgcaggacgattgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtcgcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaagacgtgcgtgacagcacgggcaaggtgatcttcaagcgcggtacgctgatggaa
gagagccatctggatgccatccatcagggcggcgtccaggaggtgaagatccgctcggcg
ctgacctgcgaactcgtcaacggcatctgcggcaagtgctacggccgcgatctcgctcgc
ggcacgccggtcaaccatggcgaagcggtcggggtcatcgcggcccagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggtgcggcgcagctgaacgag
caatctttcgtcgaatccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcc
cgcaacagcgaaggccacctggtcgcgatggttcgcaacatggtgatcgcgatcgtcgat
gccgacggcaccgagcgtgcgacgcaccgtattcagtacggttcgcgcctgcacgtcgac
gagggcgacatggtcaagcgcggccagcgtatcgtcgaatgggatccctacacccgtccg
ctcctcaccgaggtcgaaggcaccatcggcttcgaggatctggtcgagggacagtcgatc
tcggaaacgctcgacgaggccaccggtatcgccaagcgcgtggtcatcgactggcgctcg
atgcgcggcggcggggacctgcgtcccgccatcgtgatcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacggcattctgtcg
gtcgacgtcggagccaaggtccaggcgggcgacattctcgcccgtgtctcgaccgaaagc
gccaagacgcgcgacatcaccggcggtctgccgcgggtggcggaactgttcgaggctcgg
cgtccgaaggatgcggcgatcatcgccgaaatcgcgggcaccatccggtttgggcgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgacgagccgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaacccggcgccgcacgacattctggcggtcaagggcatcgag
gaactcgcggcctatctggtcaacgaaatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgatcgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctcgggcgagcagatcgacaagatcgagttcgaccag
atcaacgcgaaggccaaggaagagggcaagaagatcgccacgggaacgccggttctgctc
ggcatcaccaaggcgagccttcagacccgctccttcttctcggcagcctcgttccaggag
accacccgcgtcctcacggaggcggcggtcaacggcaaggtcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccggctgattccggcaggcaccggcgcctccatggcgaag
atccgcgaagtcgccgtgaagcgcgacaagatgatcctcgacgagcgcgagaagcaggcg
gccgtcgtgccgccggcgccggaagtggagccgatggcgctgccacctgcggaataa
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integrated database retrieval system
