Bacillus carboniphilus: LC087_04885
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Entry
LC087_04885 CDS
T09277
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bcao
Bacillus carboniphilus
Brite
KEGG Orthology (KO) [BR:
bcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcao03016
]
LC087_04885 (truB)
Enzymes [BR:
bcao01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LC087_04885 (truB)
Transfer RNA biogenesis [BR:
bcao03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LC087_04885 (truB)
Prokaryotic type
LC087_04885 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
WLR43502
LinkDB
All DBs
Position
complement(969840..970751)
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AA seq
303 aa
AA seq
DB search
MDGVILLHKPVGMTSHDCVMKARKILHTKKVGHTGTLDPDVSGVLPLCVGRGTKIVEYLL
NASKTYEAEVTIGISTTTEDQSGKMVDKVPVIQTIDKQEIEQLLKSLQGKLKQKPPMYSA
VKVNGKKLYEYARKGIEVDRPERQIEIYNMDLLSDIYDKEDTLSFSFRVHCSKGTYVRTL
AVMIGEKLGYPAHMSHLKRVASGTIKIDECISFEELEQFHGLGQFQKGFLSISDAIKHLP
KLVINDTLAEKVKNGILLSKTDETREMNQDDVIAVFNQHGTCLAIYQSYIKDDHLLKPVK
VLI
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggatggggttatattgcttcacaaaccggtaggaatgacttcgcatgactgtgtgatg
aaagctcgaaaaatccttcatacgaagaaagtggggcatacaggaacacttgatcctgac
gtttcgggtgtgttacctctatgtgtaggaagagggacaaaaatagtagagtatttatta
aatgcttcaaagacatatgaagcagaagtaaccattggcatttcaaccacaacagaagat
caatctggtaaaatggtggataaagtcccagtcattcaaacgatagataaacaagaaatt
gaacaactattaaagagtttacaaggaaaactgaaacaaaaaccacctatgtattccgca
gtgaaggtgaatggaaaaaaactatatgaatatgcacgaaagggaattgaggtggacaga
cctgaaagacagattgaaatatataacatggatcttttaagtgatatatacgataaagaa
gacaccctctctttctcttttcgtgttcattgttcaaaaggaacctatgtgagaacgtta
gctgtaatgattggagaaaaacttggttatccagctcatatgtctcatttaaaacgagta
gcttctgggaccatcaaaatagatgagtgcatatcgtttgaagaactagaacaattccac
ggtttagggcagtttcaaaaagggttcctatctattagtgatgccataaaacatttgccg
aaattagtaattaatgatacattagcagagaaagtgaaaaatggtattttgttaagtaag
acagatgaaacaagagaaatgaaccaagatgatgtgattgcagtatttaaccaacatgga
acttgcctagcaatataccaatcctatattaaagatgatcatttacttaagccagtcaaa
gtactaatataa
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