Bacillus carboniphilus: LC087_10970
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Entry
LC087_10970 CDS
T09277
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bcao
Bacillus carboniphilus
Pathway
bcao02020
Two-component system
bcao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LC087_10970 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LC087_10970 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcao03021
]
LC087_10970 (rpoN)
Transcription machinery [BR:
bcao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LC087_10970 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_11
HTH_Tnp_ISL3
HTH_23
MarR_2
HTH_3
Sigma70_r4
LacI
MarR
Fe_dep_repress
HTH_IclR
Sigma70_r4_2
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WLR41426
LinkDB
All DBs
Position
complement(2136937..2138238)
Genome browser
AA seq
433 aa
AA seq
DB search
MDMKAGLYQEQTLKLTLSTEMQQAISLLQYPSLQLYSYLEQLSIDNPLIEVEQTSEIFYH
KRETSRKQEEGTLYDPPVFLGSSLQESLYEQLLSFSLTKEQNRVITILIDSLDENGYIDA
SIEQLQKRFHLCNQILTEGLTLLQSLEPAGIGARDLQECLYLQLKRKKKIPKELLNLIKE
YFDPFVNKSWNRLKRDTGISIEKLQRYFHSLKELDPKPGSKYTDQPPIYVIPDVLFEERH
GQWSIIYNDRFLPKMTLNNDYDVMRQTDEECRSYLLKKYQQFQHLHQGLAYRRLTILKVM
ESIVQRQLDFFLMGNNVLKPLTMKEVAEQLEVHESTVSRAVKDKYVQTPYGLRKMKSFFT
NKIEQENGIDATSSRIKEMIQIIVQQEDKKKPLSDQKMVDIIQGQYYIEVSRRTIAKYRE
QLKIPSSQKRKEY
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaaagctggtttgtatcaagaacaaacgttaaaactgactttatcaacagag
atgcaacaagctatatcgttgttgcaatatccttcgttacagctttatagctatttggag
cagctttctatagataatcccctcattgaagtagaacagacttctgaaatattttatcat
aaacgcgaaacttctcgtaaacaagaagagggtactttatatgacccacctgttttttta
ggttcttcactgcaagagtcattgtatgaacagcttctttcgttctcgttaacaaaggag
caaaatagagtgattactattttaattgactcgttagatgaaaacggttacatagatgct
tcgatcgaacaattacaaaaaaggtttcacctttgtaatcaaattttaacggaaggattg
actcttcttcaatcattagaacctgctggtattggagcaagagaccttcaagagtgctta
tatctacaactaaaaagaaaaaaaaaaatcccaaaagaactcctaaatttaataaaggag
tattttgatccatttgtcaataaatcatggaaccgattaaaaagggatacaggcatttca
attgaaaagcttcagcgctattttcattcattgaaagaactagatcccaaaccaggaagt
aaatatacagatcaaccccctatttatgttattccggatgttttgtttgaagaaaggcat
ggacagtggagcattatttataatgaccgtttcttacccaaaatgacattaaataacgac
tatgatgtaatgagacaaactgatgaagaatgtcgctcctatttgttaaaaaaatatcag
cagtttcaacatttacatcaaggattagcataccgacgattaacgattttaaaagtgatg
gaaagtattgttcaacgtcaacttgatttctttttaatgggtaacaatgtcctcaaacct
ttgacaatgaaggaagtagctgaacaattagaagtacatgaatcaactgtgagccgagca
gttaaagataaatatgtacagactccttatggattgagaaaaatgaaatctttctttacc
aataagattgagcaagaaaatggtatcgatgctacttcttcccggattaaagaaatgatt
caaataatagtgcaacaagaggataaaaagaagccgttatccgaccaaaagatggtggac
atcattcaaggacaatattatatagaggtgtcgagaaggacgattgcaaaatatcgtgag
caacttaaaataccttcatcacagaaaaggaaggaatattaa
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