Brucella canis SVA13: DA85_04355
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Entry
DA85_04355 CDS
T03305
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcas
Brucella canis SVA13
Pathway
bcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA85_04355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcas03019
]
DA85_04355
03009 Ribosome biogenesis [BR:
bcas03009
]
DA85_04355
Enzymes [BR:
bcas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DA85_04355
Messenger RNA biogenesis [BR:
bcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DA85_04355
Ribosome biogenesis [BR:
bcas03009
]
Prokaryotic type
rRNA processing factors
DA85_04355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RhlB
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
AHZ81189
LinkDB
All DBs
Position
1:complement(882850..885525)
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AA seq
891 aa
AA seq
DB search
MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR
RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN
GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPRDRKRLKEIVKELEVPQGMSVILRTA
GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV
SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI
INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE
KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH
IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI
DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG
EERSEENDRKRRRRRRRRGGRERDGRDLSAQEEAVSEEASEEDNETDQANEAVSSASMSE
EDRRKKRRRGRRGGRKNRREDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVET
PVVEAAPEEKPEKPARKTRTRKKAVDEAPADEAATPAEEVVPEKPKRRTRKAAAKPVVEA
EDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKKGFF
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaaatgcttatagatgcctcccacccggaggagacccgcgttatcgtcacg
cgcggcaacaagattgaagaattcgatttcgaatcggaacataagaaacagctgaaaggc
aatatctacctcgcacgcgtcacccgtgtcgaaccgtcgcttcaggctgcattcgtggaa
tatggcggcaatcgccatggcttcctggcattttccgaaattcatcccgactattaccag
attccggtcgccgaccgccttgccctgcttgaagcggaagccaaggccgcacgcgctgaa
gacgacgaggacgaaccgcgcgccaaaagcgaccgcagtgaacgcaacgaccgcgcgcgc
cgcaatcgccgccgtggcggccgccgcgatggccagaatggcgaagcgcaggcaaacggt
gctgacaaggacctgccggcggcagagccggtcggtccgggctttgcggattacgttgcg
ggaacgcccgccgctgctctcacgcagaaaggcgatataatttccgaagccctcgacaat
ggcgatgacgatgatgtcgagaacgaagaggacatggtcgaatcggtcggctcggaagac
gctctggaagagcttccgacccacacccgcacccatcgccgccagtataatattcaggaa
gtcatcaagcgccgccagattcttctggtgcaggtggtcaaggaagagcgcggcaacaag
ggcgctgctctcaccacctatctttcgcttgccggacgttattcggtactgatgcccaac
accgcgcgcggtggcggcatttcgcgcaagatcaccaatccgcgggaccgcaagcgcctg
aaagagatcgtgaaggaactcgaagtgccgcagggcatgagtgtgatcctgcgcacggca
ggcgcaaaccgcaccaaggcggaagtcaagcgcgactatgaatatctgatgcgcctgtgg
gaaaacgtgcgcacgctgacgctgcaatcgacagcgcccgcgctcgtctatgaagaaggc
agcctcatcaagcgctctatccgtgatctttacaacaaggacatcacggaaatactcgtt
tccggcgagaacggctatcgcgaggccaaggatttcatgcgtatgctcatgccgagccat
gcgaaggtcgtccagccttaccgcgatcatattccgatcttcacgcgcaacggcgtggaa
gcgcagcttgaccgtatgcttgtgccgcaggtgacgctcaaatcgggcggctacctcatc
atcaaccagacggaagccctggttgccatcgacgtcaattcgggccgctcgacccgcgaa
cattcgattgaggacaccgcgcttcagaccaatctggaagcagccgaagaagttgcgcgc
cagttgcgccttcgcgaccttgcgggcctgatcgtcgttgacttcatcgacatggaagaa
aagcgcaacaatcgcgctgtcgaaaagaagatgaaggaatgcctgaaggatgaccgcgcc
cgcatccaggtgggccgcatctcgcatttcggccttctggaaatgtcgcgccagcgcatc
cgcgcatcggttctggaaagcaccatgcaggtctgcccgcattgcggcggcaccggacat
atccgttcggattcctccatggcgctccatatcatccgtggtatcgaagactatctgctg
cgccattcgggctttgatattcatgtccgcaccccggcagcgtccgcactttatgtgctc
aatcacaagcgccagattctggccgatctggaggggcgctttggcgtcgagatcagcatt
gatgccgacgaaagtgtaggaaaccagcactttgtcattgataagggtgcgccttctacc
cgccccgtcaccccgtcggcagtacagccgatggtctatgaggacgatatcgaagaccct
gaaatcccggtcgaagaagacgagaccgaagaagaagcaaggaccgatgttcaggctggc
gaagagcgcagcgaagaaaacgaccgcaagcgccgccgtcgtcgccgtcgtcgcggtggc
cgcgaacgtgacggtcgtgatctgtccgcgcaggaagaagccgtttcggaggaagcatcc
gaagaggataatgaaaccgatcaggccaatgaggccgtgtcatccgcttccatgagcgag
gaagatcgccgcaagaagcgtcgtcgcggccgccgtggcggacggaagaaccggcgtgaa
gacgacaaccgtgcgcgcagaattcctgatccggaattcgtcggttacacacctgttctg
ccggtaaaggccgaagaaagcatcggcgaagtagtggaaacggttgaaaccgtggaaaca
cctgtcgttgaggccgcgccggaagaaaagcctgaaaagcccgcccgcaaaacgcgcacg
cgcaagaaggctgtcgacgaagcgcctgcagatgaagccgcaacgcccgccgaggaagtg
gtacctgaaaagccgaagcgccgtacacgcaaagctgccgccaagccggttgtggaagcc
gaagacgttgccgaggtgaaggaaacggttgcggcagaaacgcaggtggaaaccatcgcg
gaaccgaaaagcacagagccggtcgtaacctccagcgagagcgaagaccggaagccgaag
cgttcgggctggtggcagaagaagggctttttctaa
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