Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0244
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Entry
BBCT_0244 CDS
T03931
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBCT_0244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcat03019
]
BBCT_0244
03016 Transfer RNA biogenesis [BR:
bcat03016
]
BBCT_0244
Enzymes [BR:
bcat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBCT_0244
Messenger RNA biogenesis [BR:
bcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBCT_0244
Transfer RNA biogenesis [BR:
bcat03016
]
Prokaryotic type
tRNA degradation factors
BBCT_0244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
BUD22
MUG2_C
PCB_OB
KH_5
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAR01212
UniProt:
B6XWF8
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All DBs
Position
320394..323075
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AA seq
893 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTLISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQTELKNIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAGEFTDMDDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVINECIDGPAEMSPYAPRIITTTVPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQESSAPRRERSDRDDRRGSRGRRDDRRDDRRSDRDDRDYDDRPRRR
RSDRDDDRDYDDRPRRRRSDRDDRDRDYDRDDRRSDRDDRDYDDRPRRRRSDRDDRDYDR
DDRRSDRRRSSRRDDRNPRYAADENYDEYRADREERSERPRRRVRRDFDPFED
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgttgaagccgtaattgataatggttcgtttggtaag
cgcacgttgcgcttcgagaccggtcgtctcgcccagcaggcggatggtgccgtcgccgcc
tatcttgacgatgattcgatgattctgtcgaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtggacgtggaagagaagatgtacgccgccggcaag
atcccgggatcgttcttccgccgtgaaggccgcccgagctccgaagctattctcgcttgc
cgcattattgaccgcccactgcgcccgttgttcccgcacacgctgcgcaacgaagtgcag
gttgtggaaaccgtgctcgccgtcaacccggacgatgcttacgatgtgatcgcactgaac
gctgcttccgcttccactctgatttccggtctgccgttcgaaggcccggtttccggcgtt
cgcctggctctgatcgacggccagtgggttgctttcccgcgttggagcgagcgtgagcgc
gccgtgttcgaaatcgtggttgccggccgcgtggtggagaacggcgatgtcgccatcgct
atgatcgaagctggcgcaggcaagaacgcctggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgttgccggtggtcttgaagcagccaagccgttcatcaaggtg
atctgcgaggctcagaccgaacttaagaacatcgctgcgaaggaaactaaggaattccag
ctcttcccggagtacaccgaagatctgtacaaccgtatcgatgagatcgcccacgctgat
ctcgacgaggctctctccattgccgagaagctgccgcgccaggatcgcattcatgagatc
aaggaaggtgtcaaggccactctcgccggcgaattcaccgacatggacgatgccgaaaag
gaaaaggagatcggcaatgcgttcaaggagctgcagcgccagattgtgcgtcgccgcatc
ctgacccaggattaccgcattgatggccgtggcctgcgcgacatccgtaccctgtccgct
gaagtggacatcgttccgcgcgtgcacggttccgcactgttccagcgtggcgaaacccag
attctgggcgtcaccaccctgaacatgctcaagatggaacagcagatcgacgcactgtcc
ggcccgcagtccaagcgttacatgcacaactatgagatgccgccgtactccaccggtgaa
accggtcgcgtcggctccccgaagcgtcgcgaaatcggtcacggtgctctggcggagaag
gctctcgtgccggtgctgccgaaccgcgaggagttcccgtatgccatccgtcaggtctcc
gaagccattggctccaacggttccacctccatgggctccgtgtgcgcatccaccctgtcg
ctgctcgccgcaggcgtgccgctgaaggctccggttgccggcatcgccatgggcctcgtg
tccggtgatgttgacggccagcacatcttcaagaccctgaccgatattctcggtgctgaa
gacgcattcggcgatatggacttcaaggtcgccggtacctccgaattcatcaccgccctg
cagctcgacaccaagctcgacggcattccggcagacattcttgcctctgctctgcagcag
gccaaggaagctcgcaccaccattctcgaagtcatcaacgagtgcatcgacggcccggcc
gagatgagcccgtatgctccgcgcatcatcaccaccaccgttccggtcgacaagatcggc
gaggtcatcggcccgaagggcaagatgatcaaccagatccaggaagagaccggtgcggag
atcgccatcgaagatgacggtaccgtgttcatctcctccgagggtggcgacggcgctgaa
aaggctaagcagatcatcgaacagatcgccaacccgcacgttcctgaagccggcgaaacc
tacaacggcaaggttgtgaagaccacctccttcggtgccttcgtgaacctgaccccgggc
accgacggactgctgcacatctcccagattcgtaatctggccaacggcgagcgtatcgac
gccgtcgaagatgtgctcaaggaaggcgacaccgttgaggtagtcgtgcagggcgttgat
gatcgcggcaagatctccttggccattccgggcttcgaagatcaggaatcctccgctccg
cgtcgtgagcgttccgatcgcgatgaccgtcgcggcagccgtggccgtcgtgatgaccgt
cgtgatgaccgtcgttccgaccgtgacgatcgtgattatgatgatcgtccgcgtcgtcgt
cgttccgatcgcgatgatgaccgtgattatgatgatcgtccgcgtcgtcgtcgttccgat
cgcgacgatcgtgatcgtgattacgatcgtgatgaccgtcgttccgaccgtgacgatcgt
gattatgatgatcgtccgcgtcgtcgtcgttccgatcgcgatgaccgtgattacgatcgt
gatgatcgccgttccgaccgtcgccgcagcagccgccgcgacgaccgcaacccgcgttac
gcagccgacgagaactacgacgagtaccgtgccgatcgcgaagagcgttccgagcgtcct
cgccgccgcgtccgccgcgactttgatccttttgaggactga
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