Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0475
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Entry
BBCT_0475 CDS
T03931
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBCT_0475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcat03019
]
BBCT_0475
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_0475
Enzymes [BR:
bcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBCT_0475
Messenger RNA biogenesis [BR:
bcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBCT_0475
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBCT_0475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAR01443
LinkDB
All DBs
Position
577446..579404
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AA seq
652 aa
AA seq
DB search
METMTQAVGSVESVGPRALGALKHYFGYDAFRPGQEGVVNAIIQGRDALGVMPTGAGKSI
CYQIPATLLPGMTIVISPLISLMRDQVDALNDVGISAAFINTTQSPDEQDLVFAQALSGR
IRLLYVAPERLETERFRTFASRVPISLVAVDEAHCVSQWGQDFRSSYLGIGDFLKALPTR
PTVAAFTATATERVRRDIIGILGLRDPSVTVTGFDRANLYFDVIRMERKHKASWVASYIA
DHPDESGIVYCATRKEVESLAESLNIAVRELRAAKGEDATRIGTIAVAYHGGMSAETRGR
AQRDFVTDRVPVVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCT
LLWNESDIATRRRLLASDYENERLTAEEQEVVRASKRRLLNAMIGYCRTTDCLHEYMTRY
FGEAGGAAVRDDGMCVGGCANCGNTFETVDVTDIARAISRCVHDVNQKVGSGKIVKVLRG
SKAQDLNYLHPADLPTYGMLSETSEARIRDVLSQMATDGFLSISEGSMPIVRFGERAAET
VAPNFHYEIKKIERKHAAKRAESPSVGSQAMGSYVPGDGDEELFAKLRALRLDIARELGK
PPYIVFSDKTLRDMVRVRPVTGEQFSQVNGVGALKLEAYGERFMEVIRDFAA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaccatgacgcaagctgttggttccgttgaatccgttggtccccgtgcgctgggt
gctctgaagcattatttcggatatgacgccttccgtcccggtcaagaaggcgtagtcaat
gcgattatccaaggtcgtgatgcgctcggtgtcatgcccaccggtgctggcaagtcgatc
tgctaccagattcccgccacgcttcttccgggcatgaccatcgtcatttccccgttgatc
tcgttgatgcgcgatcaggtcgacgcgctcaacgacgtgggcatttcagccgcgttcatc
aataccacgcaaagtcccgacgaacaggatctggtgttcgcacaggcgttgtcgggacgg
atcagactgctgtatgtggctccggaacgtttggaaaccgaacgtttccgtacgttcgcc
agtcgtgtgccgatttctctggtcgccgttgacgaagcgcattgcgtgtcgcaatggggt
caggatttccgttcgtcatatcttggtatcggcgattttctgaaggcgttgccgactcgt
ccgacggttgccgcgttcactgcgaccgcgacggaacgggtgcgccgcgatattatcgga
attctcggattgcgtgatccgtccgtcaccgtcaccggcttcgacagggctaacctgtat
ttcgacgtgatcaggatggagaggaaacataaggcttcgtgggtggcttcgtatattgcg
gatcatcctgacgaatccggcatcgtgtattgcgcgacccgcaaggaagtggagtcgctt
gccgaatcattaaatatcgccgtgcgcgagctgcgtgcggcgaaaggtgaggatgcgacg
cgaatcggcacgatcgcagtcgcctatcatggcggtatgtcggccgaaacgaggggacgg
gcgcaacgtgatttcgtaaccgaccgtgtgcctgtggtggttgccacgaatgcgttcggc
atgggcatcgacaagtcgaacgtgcgttatgtgatccaccataatatgccggaatcgatt
gaagcgtactatcaggaggccggtcgtgcggggcgtgacggcgagccgagccggtgcacg
ttgctgtggaacgaatctgatattgctacgaggcgaaggctgcttgcttcggattatgag
aacgagcgtttgaccgccgaagagcaggaggtcgtgcgtgcgtcgaaacggcgtctgctc
aacgccatgatcggttattgccgtaccacggattgtctgcacgagtatatgaccaggtat
ttcggtgaggccgggggagcggccgtccgtgatgacggcatgtgcgtgggaggatgtgcg
aactgcgggaatacgtttgaaaccgttgacgtcacggatatcgcgcgggccatcagccgc
tgcgtgcatgacgtgaaccagaaggtcggttcggggaagatcgtcaaagtgctgcgggga
tcgaaagcgcaggatttgaactatctccatcctgccgatctgccgacatacggcatgttg
agcgagacttcggaggcacggattcgtgacgtgctcagccagatggcgacggatggtttt
ctttccatttcggaaggctccatgccgatcgttcgctttggtgaacgtgcggcggaaacg
gtcgcaccgaattttcattatgaaatcaagaagatcgaacggaagcacgctgcgaaacgt
gcggaatcgccgtccgtaggctctcaggctatgggatcgtatgtgccgggcgacggagac
gaggaattgttcgccaaactgcgtgcgttgcggcttgacattgcccgcgaactcggtaaa
cccccgtatatcgtcttttccgataaaacgttgcgcgatatggtgcgtgtcaggccggtc
actggcgagcaattctcgcaagtcaacggcgttggtgcgctcaaattggaagcgtatggc
gaacggttcatggaagtgatccgcgatttcgctgcatga
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