Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0886
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Entry
BBCT_0886 CDS
T03931
Name
(GenBank) putative exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03030
DNA replication
bcat03430
Mismatch repair
bcat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBCT_0886
03430 Mismatch repair
BBCT_0886
03440 Homologous recombination
BBCT_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcat03032
]
BBCT_0886
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_0886
Enzymes [BR:
bcat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBCT_0886
DNA replication proteins [BR:
bcat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBCT_0886
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBCT_0886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
DUF2779
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
BAR01854
LinkDB
All DBs
Position
1052236..1052793
Genome browser
AA seq
185 aa
AA seq
DB search
MDPLSGRFTDFIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDEFDQLINPFEHIPSRI
TGLTGIDDGMLLGKPDVREVMDEFARWCSDTAVVMAHNASFDMSFLDNAVQLAYADRDAR
FAHHFVDTLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRDEAE
LLGML
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
ttggatccgttgtccggacgattcacagatttcatcgtgatcgacacggaaacaaccgga
ttgagcgtgcgcaaaggcgccaggctcattgaaatcggcgcggtcaaaattcacaacgat
gagctggtcgacgaattcgaccagctcatcaacccgttcgaacacatcccatcaagaatc
actggtttgacgggaatcgacgatggcatgctgctcggcaaaccggatgtgcgtgaagtc
atggatgagtttgcacgctggtgttcggacacggccgtggtcatggcgcacaatgcgtcc
ttcgacatgtcgttcctcgacaatgctgtacagctcgcttacgcggatcgggacgcgcgc
ttcgcacaccatttcgtcgacacattggatctcagccgtcggctgcatccggaaaaacga
acccacaaggtttccaccctcatcgtcgactaccacatcgccgacatggaggagcaccgc
gcattgtccgacgccaagcaggagtggatgctgtatcgcgccatgcgtgacgaggccgag
ctgctcggcatgctctga
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