Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1096
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Entry
BBCT_1096 CDS
T03931
Name
(GenBank) putative exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcat03016
]
BBCT_1096
Enzymes [BR:
bcat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BBCT_1096
Transfer RNA biogenesis [BR:
bcat03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BBCT_1096
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF5499
Motif
Other DBs
NCBI-ProteinID:
BAR02064
UniProt:
B6XU38
LinkDB
All DBs
Position
complement(1287377..1288672)
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AA seq
431 aa
AA seq
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MTDEPRLQAEPREGVPDVIDTLPAFREYCSALASSHGSLAADAERASGFRYGHDDWLVQF
KRDGAGIGLLDPQALTAEGVDWNDFNAAVGDAVWILHDSLQDLPGFNDLGLKPQRLFDTE
IAARLLGMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETI
MRAELRRQGKIEWAEEEFDYALREGTAPRKEHPVPWLRISHITEIMKDRQALAVAKALWT
KRDELARQYDISPTLLLADRTIIEVAERKPHNAAQFRAVRSINERVRIQADAEQEKMFER
YAPIQRKIKPSMWKKIIQQALDLPESEWPVIDNGNPQNQEAQATSAPRATRVWRERYPER
LATLAKARKVVAQIAEDTRTPAEVIIKPQYLRNLCWTDEPQERDVAQFLTEQGARAWQVA
LVAESVSRAIM
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgagccaaggttgcaggccgagccgcgtgagggcgtgcccgatgtgatcgac
accctaccggcatttcgcgagtactgcagcgctttggcgtcctcacacgggtctcttgct
gccgatgcggagcgagcatccggtttccgatacggtcatgacgattggttggtgcagttc
aaaagggacggtgccggcataggattgcttgatccgcaggcattgactgctgaaggtgtt
gattggaacgatttcaatgctgccgtaggcgacgcggtatggattctgcatgattctctg
caggatctgccgggattcaatgaccttggattgaagccgcagcggttgttcgacaccgag
atcgccgcgagactgctcggcatgaaacggttcggtttggccgccgtcaccgagcattac
ttgggattgacacttgccaaagagcattccgcagccgattggtcataccgtccgttgccg
cgtgactggcgcaattatgcggcgttggatgttgaattgctgatcgagctggaaacgatc
atgcgcgccgaactgcgccgtcaaggcaaaatcgaatgggccgaggaggaattcgattac
gcgctgcgcgaaggaaccgcgccacgcaaagagcatcccgttccatggctgcgcatctcg
catatcaccgaaatcatgaaggaccgtcaggccttggctgtggcgaaagcactatggacc
aagcgagacgagctggcgcgccaatacgatatttcgccaacgctgctgcttgccgacaga
accatcatcgaagtggcggagcgcaagccgcacaatgccgcacaattcagggcggtgcgt
tccatcaacgaacgtgtgcgcatccaagccgacgccgaacaggagaaaatgttcgaacgc
tacgcgcccatccaacgcaaaatcaagccaagcatgtggaagaaaataatccagcaggcg
cttgatctaccggaaagcgagtggccggtcatagacaacggcaatcctcagaatcaagaa
gcgcaagccacatccgccccacgtgcgacacgagtctggagggaacgctatccggaacgc
ctcgccacacttgccaaggcacgcaaggtggtggcgcagatagcggaagatacgcgcaca
cccgcggaagtcatcatcaaaccgcagtatttgcgtaatctctgctggacggatgagccg
caggaacgtgatgtcgcgcaattcctcaccgaacagggcgcgagggcgtggcaggtcgcg
ctggttgcagagtccgtgagtcgcgctattatgtag
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