Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1125
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Entry
BBCT_1125 CDS
T03931
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BBCT_1125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcat03021
]
BBCT_1125
Transcription machinery [BR:
bcat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BBCT_1125
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
DprA_WH
CDC27
Motif
Other DBs
NCBI-ProteinID:
BAR02093
LinkDB
All DBs
Position
complement(1326968..1328341)
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AA seq
457 aa
AA seq
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MATKETTASMEQADLTEKTTSTKKAATRKASTKKSAAKKTPATKTPRKTTAKKSAPAKKE
EEQIEDDVLDDEDAQVDDPDLDDFDDDLDDVDSDDDDDLDDDEESEPEDDDDEEERKKPE
EPKEKGAFVVRDDDDDENLTPSGNPKRRVIAAGATADPVKDYLKQIGRVSLLNAEQEVDL
SERIEAGLYAQHLLDTESDQMDFKRKRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTG
RGMLFLDLIQEGNLGLIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHM
VEVINKLSRVQRQMLQDLGREPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGD
SEFGDLIEDTDAIAPSDAVAFSLLQEQFRQVLETLSPREAGVIKMRYGLEDGQPKTLDDI
GRVYGVTRERIRQIESKTMSKLRHPSRSQTLRDFLDQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttggccaccaaggaaacgacggcaagcatggaacaggctgatctgaccgaaaagaccacc
tccacgaagaaagccgccacgcgtaaagcctccaccaagaaaagcgcagcgaagaaaacc
cctgccacgaagacccctcgcaagaccaccgccaagaagagcgcccccgccaagaaggaa
gaggagcagattgaggatgacgtccttgacgatgaggacgctcaggtggatgaccccgat
ctcgatgatttcgatgacgatctcgatgacgtcgattcggatgatgatgacgatctcgat
gatgacgaggaatccgagccggaggatgatgacgacgaggaagaacgcaagaagccggaa
gagcccaaggaaaagggcgctttcgtggttcgagacgatgacgatgatgagaatctgact
ccgtccggcaacccgaagcgtcgtgtgatcgcagcaggagcgaccgccgatcctgtcaag
gattacctgaagcagatcggtcgagtgagcctgctgaacgcggagcaggaagtcgacctg
tccgagcgtattgaggctggtctgtatgcccagcacctgctggacaccgaatccgaccag
atggacttcaagcgcaagcgcgagcttaagtgggccgcaaacgatggcaggcgtgccaag
gaccacctgttggaggctaacctgcgactcgtggtgtcgctggctaagcgctacaccgga
cgcggcatgctgttcttggatttgattcaggaaggcaaccttggtttgattcgcgctgtt
gagaagttcgattggaagaagggcttcaagttctccacctacgccacgtggtggattcgc
caggccattacccgagccatggccgatcaggcgcgtaccattcgtgtgcctgtgcacatg
gtcgaagtgatcaacaagctatcccgtgtgcagcgccagatgcttcaggatcttggccgc
gaacctacgccggatgagcttgcgcgcgagcttgacatgccagtcgagaaggtgcaggaa
gtgcagaagtacggtcgtgagcctatctccctgcataccccgctgggcgaagacggcgat
tccgagttcggtgatctgatcgaagacaccgacgccatcgcaccgtccgatgcggttgct
ttctcgctgttgcaggaacagttcaggcaggtgcttgagacgctgtctccgcgcgaggcc
ggtgtgatcaaaatgcgctatggcttggaagatggtcagccgaaaacgctcgacgacatt
ggccgcgtgtatggcgtaacccgtgaacgtattcgccagattgagtcgaagaccatgtcg
aagctgcgtcacccgtctcgttcgcagacgttgcgtgacttccttgatcagtga
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