Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1264
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Entry
BBCT_1264 CDS
T03931
Name
(GenBank) putative DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03420
Nucleotide excision repair
bcat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBCT_1264
03430 Mismatch repair
BBCT_1264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_1264
Enzymes [BR:
bcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBCT_1264
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBCT_1264
MMR (mismatch excision repair)
Other MMR factors
BBCT_1264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
Viral_helicase1
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
BAR02232
UniProt:
B6XT85
LinkDB
All DBs
Position
complement(1493047..1494555)
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AA seq
502 aa
AA seq
DB search
MERMSATVEEILDGLDDAQRAAATAVDGPVRIIAGAGAGKTRTVTRRIAYACATKAWNPR
STMAVTFSVKAAAEMRSRLSKLDVAADVKAATFHSAALHQLRQIWPDVCEGPMPFICRNP
RELVERSLRRVTTFQVDDDTIRNLQTEINWCKISLISPEDYARVCAAMHRQPPSGLEPSQ
FVDVYKAYEAEKTNRNEIDFDDILLIVCHLMESDEDVASAIRSNIAWLTVDEYQDVSPLQ
HRLLTRWLGSNRNICVVGDPAQTIYSFAGASSYSLLNFASEFGPLTADINLNNDYRSTPQ
IVNYANRVLAASPQRADYLKLSSERSKGRRVAETIYGSDWEEAQGVAARIRKLVDAGESS
ADCAILTRVNAQQKILCKALGEQHLRYRVRRDSGWQNSALSDDAQTRLAMLEALGVGADL
SGVTISTIHASKGLEFKHVFLIGCSEGLIPYGAPQEGEVLEEERRLMYVAVTRAEDTLDV
SYARTREGNEGERARRVSRFFR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcatgagtgcaacagtggaagaaattctcgacggattagatgatgcgcaacgg
gctgccgcaacggcagtggacggtccggtgcgcatcatcgcgggcgcgggcgctggcaaa
acgcgaaccgtaacccgcagaatcgcttatgcgtgcgcaaccaaagcatggaatccacga
agcacgatggcggtcacgttctccgtcaaggcggcggcggaaatgcgcagccgactgtcg
aagcttgatgtcgcagctgacgtcaaagccgcgaccttccactccgcggccctccaccag
cttcgccagatttggccggacgtgtgcgaagggcctatgccattcatctgtcgaaatccg
cgggaactggtggagcgttcgctgcgtcgcgtcaccacctttcaggtggatgacgacacc
atacgcaacttgcagacggaaatcaactggtgcaaaatctcgctgatctcgccggaagat
tacgcgcgcgtttgcgcggcaatgcatcgtcaaccgccttcaggtcttgaaccaagccaa
ttcgtagacgtatacaaagcgtatgaagcggaaaaaacaaatcgcaacgaaatcgatttc
gacgatattctgctgattgtatgccatttgatggaaagcgatgaagacgtagcctcagcc
atccgctccaatatcgcatggctcaccgtcgacgaatatcaggacgtttcgccactgcaa
caccgcttgctcacccgatggctcggctcaaaccgcaatatctgcgtggtaggagatccc
gcacaaaccatttactcgttcgcaggcgcaagcagttacagtctgctcaatttcgcttcg
gaattcggtccgctcaccgcagacatcaacctcaacaacgactaccgttccacgccgcag
atcgtcaactatgccaatcgtgtgcttgcggcatcgccgcaacgggccgattatctgaag
ctcagctctgaaaggagcaaagggcgaagggttgcggaaaccatatacggcagtgattgg
gaagaggcacaaggcgtagcggcacgtattcgcaaactggtggatgcgggggagtcgtcg
gccgattgcgcgattctcaccagagtcaacgcacagcagaaaatcctgtgcaaggcattg
ggcgaacagcatctaagataccgcgtgcgcagggatagcggatggcagaattccgcgctt
tccgacgatgcacaaaccagattggccatgttggaagcattgggcgtcggcgcggatttg
agcggcgtgaccatttccaccatccacgcgtccaaaggcttggaattcaaacacgtattt
ctcatcggctgttcggaagggctcataccgtatggagccccgcaggagggcgaagtgctt
gaagaggagcgcagactcatgtatgtggctgtgacgcgcgctgaggacacgcttgacgtt
tcatatgcgcgcacccgtgaaggcaatgagggcgaaagggcacgacgggtgtcacgcttc
ttccgctga
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