Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1340
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Entry
BBCT_1340 CDS
T03931
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBCT_1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcat03019
]
BBCT_1340
Messenger RNA biogenesis [BR:
bcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBCT_1340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Pinin_SDK_N
Presenilin
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
BAR02308
UniProt:
A0ABN5V2K1
LinkDB
All DBs
Position
complement(1602030..1604084)
Genome browser
AA seq
684 aa
AA seq
DB search
MAIEETKTVTTHKRGSKAAKRTENTQTADVKSAKSVSSEKANKAETTSKRTKSSGRGGSR
GNGSGSSKGAKNVKKAKGTKPSRNSKSANAASSSAGNRRNSRLAPQTTAPQQDDVLIAPP
KYRKGSMRIVPLGGLGEIGRNMNVVEYNGHLLLIDCGVLFPEEEQPGVDLILPDFHYIKD
RLDKVDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVEAKCKEHRINPRLVEVK
GRDKLKVGPFNLEFVNVTHSIPDALAVFVQTPAGSLIDTGDIKLDQLPLDHRITDLVEFG
KLGEKGVDLLMMDSTNAEVPGFVKPETTIGPALDQAFAQATRKIIVASFSSHVHRVQQVV
DAAHKYGRKVVFVGRSMVRNMSIAADLGYLRLPEDTVIDLKKAHDVQDDKLVYMCTGSQG
EPMAALGRIADGNHRDITINEFDTVILASSLIPGNEHGVYKIINKLVQLGARVVNRDNAA
VHVSGHCNEGELLYMYNIVKPKCAMPIHGENRHLVANGMIAVKTGVDPQNVVLAEDGDVV
DLYHGQAAVVGSVPCGYVYVDGDSVGELTEEELEKRRILGTEGFVSSFVVVDTETADVVA
GPKIYLNAVAEDESEFDKVRHQIVEQLQDAMMTGTRDTYKLQQIMRRTLGSWVARQLHRK
PMIVPVVADIAQDVDEAMGLNAAQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctatagaagaaaccaaaacagtaactacgcacaagcgcggcagcaaagctgccaag
cgcactgaaaatacccagaccgcggatgtgaaatctgcgaagtctgtaagctccgagaag
gccaacaaggccgaaacgacttccaagaggacgaagtcttctggtcgtggcggttcccgc
ggcaatggtagtggctcctccaagggtgcgaagaacgtcaagaaagcgaaaggcaccaag
ccttctaggaactccaagagtgctaatgcggcaagctcttctgccggcaaccgtcgtaat
tcccgtcttgccccgcagactaccgcaccccagcaggatgacgtgttgatcgctccgccg
aagtaccgcaagggttccatgcgcatcgtgccccttggcggtcttggtgaaatcggccgt
aacatgaacgtggtcgaatacaacggccatctgctgctcatcgactgcggtgtgcttttc
cctgaagaggagcagccgggcgttgatttgatcctgcctgacttccattacatcaaggat
cgtctcgacaaggtcgatgctctggtgctcacccacggccacgaggatcatatcggtggc
gtgccgtatctgctgaagcttcgtcctgatattccgctgatcggttccaagctcacgttg
gctttcgttgaagccaagtgcaaggagcatcgcatcaatccgcgactggttgaggtcaag
ggacgcgacaagctgaaggtcggtccgttcaatcttgagtttgtgaacgtcacgcattcc
attccggacgctttggctgtgttcgtgcagactccggccggaagcctcatcgataccggc
gatatcaagctcgatcagctgccgctcgaccatcgcatcaccgatttggtggagttcggc
aagcttggtgaaaagggcgtggatctgctgatgatggattccaccaacgctgaggttcca
ggcttcgtcaagccggaaaccaccattggtccagcgcttgatcaggcattcgcccaggcc
acgcgcaagatcattgtggccagcttctccagccatgtgcaccgcgtgcagcaggttgtt
gacgccgctcacaagtatggccgcaaggtggtgttcgtgggccgttccatggttcgcaac
atgtccattgctgcggatttgggctacttaaggcttcctgaagacacggtcatcgacctg
aagaaggctcatgacgtgcaagacgacaagctcgtctacatgtgcactggttcccaaggc
gaaccgatggccgcacttggccgcatcgccgacggcaaccatcgcgacatcaccatcaac
gaattcgacacggtcattcttgcgagctccctgattccaggcaacgagcatggcgtgtac
aagatcatcaacaagctggtgcagcttggcgcccgcgtggtcaatcgagacaatgccgcc
gtgcatgtgtccggccactgcaatgagggtgaactgctgtacatgtacaacatcgtcaag
ccgaagtgcgccatgccgattcatggtgagaaccgccatttggtggcgaacggcatgatt
gcagttaagacgggtgtcgatccgcagaatgtggtgctcgctgaagatggcgacgtggtc
gatttgtaccacggccaggctgctgttgtcggttccgtgccatgcggttacgtgtacgtt
gacggcgattccgttggcgaacttaccgaggaagagcttgagaagcgtcgtattctaggc
acggaaggtttcgtgtcgagcttcgtcgttgtcgatacggaaaccgctgacgttgtcgca
ggtccgaagatctatctcaacgcggttgccgaagacgaaagcgaattcgacaaggtccgt
catcagatcgtcgagcaattgcaggatgcgatgatgactggtacgcgcgatacgtacaag
cttcagcagatcatgcgtcgtacgttgggtagctgggtcgcacgtcagctgcatcgcaag
ccgatgatcgttccggtcgttgccgatattgcgcaggatgttgacgaggcgatgggattg
aacgcagcgcaatga
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integrated database retrieval system
