Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1354
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Entry
BBCT_1354 CDS
T03931
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBCT_1354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcat03021
]
BBCT_1354
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_1354
Enzymes [BR:
bcat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBCT_1354
Transcription machinery [BR:
bcat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBCT_1354
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBCT_1354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Mt_ATP_synt
Motif
Other DBs
NCBI-ProteinID:
BAR02322
LinkDB
All DBs
Position
complement(1634109..1638122)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHEDLPGLQDEFDNDIANLEKRRNAEIEERAKKVESD
LAELEAEGEARGSARAKLRNSAEREMAAIRIRFDEQIQRLSAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAASKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPEDFVLPKGWEPSEIEVVDPEPGSPAVVKEER
FHDGSVLFATSYGRILFNSTLPVDYPFVNDQAPKKRLSKIVDDIATRYSTAQVAATLDAL
KDMGFTRAPWSGVSFAFSDVIQPSERDEFIEKYEAEAEKVNENYEIGMLTEEERRQELID
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMKVGERDAEGNLHLVKAADGGPYSRLLAADVIDPADGETVLYKAGDALSMDVLNDLVA
HDVEEVKARSVLTCDSKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVEDTERGRQVMLKPDDES
VEPIVYPVTRRAPMLVKDGEHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKASNMKAVKEGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAVVEPDKAIRDTIYPNFGLGGDESDAAFGDADLSEVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQMDLGDNL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggcctggccaccgccgatgacatc
cgtaattggagccatggcgaggtcaagaagcctgaaaccattaactaccgtaccctgaag
ccagagaaagacggtctgttcggcgaacagatcttcggacctacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtacgcttcaagggcatcgtctgcgaacgctgtggtgtg
gaagtcaccaagagccgtgtgcgccgtgagcgcatgggccatatcgagcttgccgctccg
gtgacccacatctggttcttcaagggtgttccgtcccgtttgggctacctgctggacatc
gctccgaaggatctggaaaaggtcatctactttgccgcctacatggtcaccagcgtcgat
gaggaacagcgtcacgaggatcttccgggtctgcaggatgagttcgacaacgacatcgcc
aacctggagaagcgtcgcaacgcggaaatcgaagagcgtgccaagaaggtcgaatccgat
ctggccgaacttgaggccgaaggcgaagccaggggctccgcacgcgccaagctgcgcaac
agcgccgagcgtgaaatggccgcgatccgcatccgtttcgacgagcagatccagcgtctg
agcgccgtgttcgaccgcttcaagaacctgaagccgggcgacatggaaggcgacgtcgac
ctgtggcgtgaaatggaagaccgctacggcgactacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgcttgcaggacttcgatctcgaggccgcttccaagcagctgcgtgag
gaaatcgacaccggcaccggccagcgcaaggcccgcgccctgaagcgtctgaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaagccatggtgctcgacgtgatcccggtc
attccgccggatctgcgcccgatggtgcagctcgacggtggccgtttcgccacctccgat
ctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgctcctgaaatcatgctcaacaacgaaaagcgcatgcttcaggaagccgtcgac
tccctgttcgacaacggtcgtcgtggccgtccggtcaccggcgcttcgaaccgcccgctg
aagtccctgagcgacatgctcaagggcaagcagggtcgtttccgccagaacctgctgggt
aagcgtgtggactactccggtcgttccgtgatcgtggtcggtccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgaactgttcaagccgttcgtcatcaagcgt
cttgtggacctcaactacgcgcagaacatgaagagcgccaagcgtcttgtggaccgtggc
gattccgaagtgtggggcgtgctcgaagaggtcatcgccgagcatccggtgcttctgaac
cgtgcacctacgctgcaccgtctgggcattcaggcgttcgagccgatcctggtggaaggc
aaggccatccacctgccgccgcttgcctgcgctgcattcaacgccgatttcgatggcgac
cagatggcagtccacctgccgctgtccgccgaagcccaggccgaggcccgttccctgatg
atggcttccgacaacattctgaagccggcagacggccacaccgtgaccatgccgagccag
gacatgattctcggtctgtactacctgaccactgtcatcgacggcgccaagggccagggc
cgtgtgttctcctcgcttgaagaggccgaaatggcgctcgacaagcacgagattgacatg
caggccaaggtgcttatccgccttccggaagacttcgtgcttccgaagggttgggaaccg
agcgaaatcgaagtcgtcgatcctgaaccgggcagcccggcggtggtgaaggaagagcgt
ttccacgatggttccgtgcttttcgcaacctcctacggccgcatcctgttcaacagcacg
ctgccggtcgactacccgttcgtgaacgatcaggctccgaagaagcgcctgagcaagatc
gtcgacgacatcgcaacccgttactccaccgcacaggtggctgcaacgctggatgctctg
aaggatatgggcttcacccgcgcaccgtggtccggtgtgtccttcgcgttctccgacgtt
atccagccgtccgagcgcgacgagttcatcgagaagtacgaagccgaagctgaaaaggtc
aacgagaattacgaaatcggtatgctcaccgaagaggagcgccgccaagaactcatcgac
ctgtggaccaagtgcaccagcgaggtttccgaggctgtcgaggaacacttcgactccaag
aacaacctggctatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggcatgcgaggcctcgtggccaacccgaagggcgagatcattcctcgacctgtg
aagtccaactaccgcgacggcctgtccgtgttggaatacttcatctcccagcacggcgcg
cgtaagggcctggccgataccgcactgcgtaccgcagagtctggttacctgacccgtcgt
ctggtggacgtctcccaggacgtgattgtgcgcgaagaggattgcggcaccaagcgcggc
ctgacgatgaaggtcggcgagcgtgacgctgagggcaacctgcatcttgtcaaggctgcc
gacggtggtccgtattcccgtctgctcgcagctgacgtgatcgatccggccgacggcgaa
accgtgctgtacaaggctggcgacgcactgtccatggacgtgctcaacgatctcgtcgct
cacgatgtggaagaagtcaaggcccgttccgtgctcacctgcgactccaagcgcggtgtg
tgcgccaagtgctatggctggtctctggccaccaacaagctggtggacgtcggtgaggcc
gttggcatcgtagcggcacagtccatcggcgagcctggtacacagctgacgctgcgttcc
ttccactccggcggcgtcgcttccgcatccgatatcacccagggtctccctcgtgttacc
gagcttttcgaagctcgtaccccgaagggcgaggctccgatcgcggagttcgcaggcgtg
gtcaaggtggaagacaccgagcgcggccgtcaggtcatgctgaagccggacgacgaatcc
gtcgaaccgatcgtctacccggtgacccgtcgcgccccgatgctggtcaaggacggcgag
catgtcgaagctggcacccagctgatcgaaggctccgtcgatcctaagaagatcctgcgc
atcctcggcccgcgcgccgcccaagtgaacattgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatattcacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgtatcaccgtgatcgactccggcgacaccgacctgcttccgggtgaactggtggatcag
gcccgcttcaaggcctccaacatgaaggccgtgaaggaaggcggcaagcctgccgccggc
cgtccggagctgatgggcatcaccaaggcttcgctggcaaccgattcctggctgtccgca
gcctccttccaggagaccacccgcgtgcttaccgaagccgccctgagccagaaggtcgac
gacctgaagggcctcaaggagaacgtcatcatcggtaagctcattccggccggtaccggt
cttgcccgttaccgtaacgccgtggtcgagcccgacaaggccattcgcgacaccatctac
ccgaacttcggtttgggtggcgacgagtccgatgctgccttcggcgacgcggatctgtcc
gaagtcgacttctccaacatcgatttcggcgatctgaagctaggcgacgacttcaatccg
gatgacttcctggacgacaatggcggccagatggatttgggcgacaacctgtga
DBGET
integrated database retrieval system
