Brevibacterium casei: I6G59_09655
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Entry
I6G59_09655 CDS
T06973
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcau
Brevibacterium casei
Brite
KEGG Orthology (KO) [BR:
bcau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6G59_09655 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcau03400
]
I6G59_09655 (ligD)
Enzymes [BR:
bcau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6G59_09655 (ligD)
DNA repair and recombination proteins [BR:
bcau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6G59_09655 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPS32299
UniProt:
A0A449CYU1
LinkDB
All DBs
Position
2160970..2161881
Genome browser
AA seq
303 aa
AA seq
DB search
MGETVRIAQVRIDHADKVLFGPDGPPVTKADLARYCADIAEAMLPHTRGRPISMERFPHG
IDGESFFEKRAPAYFPDFVHRVRVDVETEHRSQDQVAIDNTQTLVYLADQACLTPHTWLS
TAADLERPDQLIVDLDPTVPGLEAVRRATTMVGNLCEDLGLTAFVKTTGSRGYHVMVPLR
PDHDFDVVRDFAHRFAEVLVARDPDLLTTAARKAKRGDRVYLDVARNAYAQTAVPPFAVR
ARPGAPVSMPITWDEVDTVAPQEFTIASAARRVKTHGDPWAGIARHRQGLSRAMERLERL
SGT
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacggtgcggatcgcgcaggtgaggatcgaccacgcggacaaggtgctcttc
ggccctgacggcccaccggtgacgaaggccgatctcgcccggtactgtgccgacatcgcc
gaggcgatgctgcctcacacccggggccggccgatctcgatggagcgcttcccccacggc
atcgacggggaatcgttctttgagaagcgggcacccgcgtacttccctgacttcgtccac
cgggtgcgggtcgacgtcgagaccgagcaccgcagccaggaccaggtggccatcgacaac
acgcagacgctcgtctatcttgccgaccaggcgtgcctgactccgcacacgtggctttcg
accgcggccgacctcgagcggcccgaccagctcatcgtcgacctcgacccgactgtgccg
ggacttgaggcggtgcgccgggcgacgacgatggtcgggaacctctgcgaggacctcgga
ctcacggccttcgtcaagacgaccgggtcccgcggctaccacgtcatggttccgctgcgc
cccgaccatgacttcgacgtcgtccgcgacttcgcccaccgcttcgccgaggtcctcgtc
gcccgcgaccccgacctgctcaccacagcggcgcgcaaagcgaagcggggtgaccgggtc
tacctcgacgtcgcccgcaacgcgtacgcgcagacggccgtgccgcccttcgcggtgcgc
gcgcgtccgggagcgccggtgtcgatgccgatcacctgggacgaggtggacaccgtcgca
ccgcaggagttcacgatcgcctccgccgcccggcgcgtgaagacccacggcgatccgtgg
gcgggcatcgcccggcaccgacagggcctgagcagggcgatggaaaggctcgagcggctg
agcggcacctga
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