Bacillus cereus B4264: BCB4264_A5243
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Entry
BCB4264_A5243 CDS
T00805
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bcb
Bacillus cereus B4264
Pathway
bcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCB4264_A5243 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcb03019
]
BCB4264_A5243 (vacB)
03016 Transfer RNA biogenesis [BR:
bcb03016
]
BCB4264_A5243 (vacB)
Enzymes [BR:
bcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BCB4264_A5243 (vacB)
Messenger RNA biogenesis [BR:
bcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCB4264_A5243 (vacB)
Transfer RNA biogenesis [BR:
bcb03016
]
Prokaryotic type
tRNA degradation factors
BCB4264_A5243 (vacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_PDCD11
OB_Dis3
DUF8447
Motif
Other DBs
NCBI-ProteinID:
ACK63898
UniProt:
B7HEC6
LinkDB
All DBs
Position
complement(5043198..5045624)
Genome browser
AA seq
808 aa
AA seq
DB search
MEEIIQEHIDKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVTMEEKGLVIRT
RSNRYGLPEKMNLIRGKLIGHARGFAFVVPDEKKTGDDDLFIPPTELNGALHGDTVLARL
SSQSSGSRQEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFVLKSASMGAVE
GHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSV
PETISEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQE
GSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKH
EIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAI
DFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE
DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA
RYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNETQAKWREKLPEI
AEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVH
VSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPRR
KFKDRPVVIEQPRTGRKKRGGRSERSNERGGERGTGRKFDRGGKGKGRGSASASASASQP
GKKDGNGKKKKAFFENVPGFKKKKKKRK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
ttggaagaaatcatacaagaacatattgataagttgttattatttatgagagaagaagcg
tataaaccgctaacgatacaagagttagaagaggcatttgggattgaaggttctgagggc
tttaaagatttcgtaaaggcacttgtaacgatggaagaaaagggacttgttattcgtact
cgtagcaaccgttacggtcttcctgaaaagatgaatttaatacgcggtaagttaattgga
catgcacgtggttttgcattcgttgtaccagatgagaagaaaacgggagacgatgacctt
ttcataccgcctacagaattaaacggtgcgcttcatggcgatacagtattagcacgcctt
agttcccaatcgagtggttcgcgtcaagaaggttcaattgtacgcattttagaacgcgga
acgaaagagttagttggtacatatacagaatcgaaaaactttgggttcgttatacctgac
aataagcgctggacaagtgacattttcgtattgaaaagtgcatctatgggcgctgtagaa
ggtcataaagtagttgtgaaaattacgagctatccagagaatcgtttaagtgcagaaggt
gaagttattcaaattctaggtcataaaaatgatccaggagtagatattttatctgtcatt
cataaacatcacttgcctttagcgttccctgaagaagtgatggaacatgccaacagtgta
ccagaaacgatttcagaagaagatttaaaagatcgccgtgatctacgtgaccaaatgatc
gtaacgattgacggtgcagacgcaaaagatttagatgatgctgttacagtaacgaaactt
gagaacggtaactacaagctaggcgttcacattgcggatgtaagtcattacgttcaagaa
ggttctccaattgatgtagaagcagcggaaagagcgacgagtgtgtatcttgttgaccgt
gtaattccgatgattccacaccgtctatctaacggtatttgttcattaaatccgaaagta
gaccgtctgacattatcttgtgaaatggaaatcaacaacttaggtgatgttgttaaacac
gagattttccaaagtgtaattaaaacgacagagcgtatgacttatgctgacgtaagaagc
attttagaagatgaggacgaagagttaattaagcgttatgagccgctcgtaccgatgttt
aaagagatgggtcaattggcacaaattttacgtgaaaaacgtatgcgccgtggtgcaatt
gactttgactttaaagaagcgaaagtattagtggatgaagaaggaaaaccgacagacgtt
gtcatgcgcgatcgttctgtatcagagaagttaattgaagaatttatgcttgttgcgaat
gaaacagtagcagagcacttccactggatgaacgtaccattcatgtaccgtgtccatgaa
gatccgaaagaagataagttagagcgtttcttcgagtttgtaacgaacttcggatatgcg
gtaaaaggacgtgcgaatgaagtacatcctcgtgcgctgcaacaaattcttgaaatggtt
caagggcagccagaagaagtagttatttcaacagtaatgcttcgttctatgaagcaagcg
cgttacgatgcggatagcttaggacatttcggtttatcaactgagttctacacgcatttc
acatcaccaattcgtcgttacccggatacaatcgttcatagattaattcgtgaatacatt
attaacggtaaagtcgacaacgaaacgcaagcaaaatggcgtgaaaaattacctgagatt
gcagagcattcttctaatatggaacgtcgtgctgttgaagcagagcgtgaaacagatgag
atgaaaaaagcagagtatatggttgataagatcggtgaagagtatgacggtatgattagc
tctgtaacaaacttcggtttattcgtagagcttccaaatacaattgaaggtcttgtacac
gttagttatttaacggatgattactaccgttatgacgagcaacatttcgctatgatcgga
gaacgtacaggaaacgtattccgcatcggtgacgaaattacaattcgcgttattaacgta
aacaaagacgagcgtgcaatcgactttgaaatcgttggcatgaaaggcacacctcgtcgt
aagttcaaagatcgtccagtcgttattgagcagccaagaacaggcagaaagaaacgcggt
ggacgtagcgagcgcagtaatgagcgcggcggtgaacgtggcacaggtagaaaatttgac
cgtggtggtaaaggaaaaggaagaggatctgcatctgcatccgcttctgctagccagccg
ggaaaaaaagatggtaacggtaagaagaaaaaagcattcttcgaaaacgtaccaggattc
aagaagaaaaagaaaaagcgtaagtaa
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