Bartonella clarridgeiae: BARCL_0354
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Entry
BARCL_0354 CDS
T01394
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bcd
Bartonella clarridgeiae
Pathway
bcd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BARCL_0354 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcd03021
]
BARCL_0354 (rpoD)
Transcription machinery [BR:
bcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BARCL_0354 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
CC2-LZ
Sec8_N
Arfaptin
Motif
Other DBs
NCBI-ProteinID:
CBI76035
UniProt:
E6YGP7
LinkDB
All DBs
Position
379981..381990
Genome browser
AA seq
669 aa
AA seq
DB search
MATKVKQKDSVEEMGKVSSDGPLLDFSDDAIKKMIKLAKKNGYVIMDELNAALSADEFTS
EQIEDTLAMFSEMGINVIDDEDEIESEQYEEEIAIEGGDLVEATNYAVATTSKREVADRT
DDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWREELKEQ
RILLREIIDLEMTYAGPEAKQAPIIEESEVKKIKEETLSSSMRDMDDIEEDIGGEDDDED
DDEVNLSLAAMENELCPQVVETLDFIADTYVKLRKLQDQQVESSLSYRKEEPLSSAQRKQ
YNQLKDDLIQAVKSLSLNQNRIEALVEQLYDINKRLIHSEGKLKRLASNYGIGHEDFLRE
YQGRELDADWVNYIAALSGRGWKEFSTCEAKVIQNLRSEIQNLAQETAISIGEFRRIVTQ
VQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELS
SKLSMPLEKVRKVLKIAKEPISLETPVGDEDASHLGDFIEDRNALLPIDAAIQANLRDTT
TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRS
RKLRSFLDS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaggttaaacaaaaagatagtgtggaagaaatgggcaaagtgagctcggat
ggtcctcttcttgatttttccgatgatgctatcaaaaaaatgattaaactcgccaaaaaa
aatggctacgtgataatggatgaattgaatgcagctctttctgctgatgaattcacgtct
gaacaaattgaagatacattggcgatgttttctgaaatgggcattaatgttatagacgat
gaagatgaaattgagtctgaacaatatgaggaagaaatcgcaatagaaggtggcgattta
gtagaagccacgaactatgcagttgcaacaacatctaagcgtgaggtagctgatcgaact
gatgatccagtgcgtatgtatttacgtgaaatgggggctgttgaactactttcgcgtgaa
ggtgagattgctattgctaaacgtattgaggccggacgtgaaacaatgatttctgggctt
tgtgagagtcctttaacatttcaggctttaattatttggcgtgaagagttaaaagaacaa
cgtattcttcttcgtgaaattattgatcttgagatgacttatgctggtccagaagcgaag
caggcaccgattattgaggagagtgaagtaaaaaagataaaagaggaaacactatcttct
agcatgcgtgatatggatgatattgaagaagatataggaggggaagatgatgacgaagat
gatgatgaagtcaacttatcgcttgcagcaatggaaaatgagttatgccctcaagttgtg
gaaactttagactttattgctgatacttatgtaaagttacgtaagttacaagatcaacaa
gttgaaagcagtttatcatatcgcaaagaagaacctctttcatctgctcaaaggaaacaa
tataaccaattgaaagatgatttaattcaagcagtaaaatctctttctttgaatcaaaac
cgtattgaggcattggttgagcaactttatgatatcaataagcggttgatacatagcgaa
ggtaagttgaagcggcttgctagtaactatgggattgggcatgaagattttttaagagaa
tatcaaggtcgtgagttagatgcagattgggttaattatattgcagctttatcagggcgt
ggttggaaagagttttcaacttgtgaagccaaagttattcaaaatttgcgtagtgaaata
caaaatcttgcgcaagaaactgctatttcaattggtgaatttcgtcgaattgttacacaa
gtacagaaaggagagcgtgaagcggccattgctaaaaaggaaatggtggaagctaatttg
cgccttgtaatttcaattgccaaaaaatacactaatcgtggtttacaatttcttgatctt
attcaagaaggtaatatcggtctgatgaaggctgttgataaatttgaatatcggcgtgga
tataaattttcaacttatgcgacatggtggattcgtcaagcaattacacgttctattgct
gatcaggcacggactatccgtattcctgttcatatgattgagacaattaataaaatcgtt
cgtacatcgcgccaaattttacatgaaattggacgtgaacctacaccagaggaactctct
agcaaactttctatgccattagaaaaagtgcgaaaagtgcttaagattgcaaaggaacct
atttcacttgaaactcctgttggtgatgaagatgcttctcatttaggtgattttattgag
gatagaaacgcgttattaccaattgatgcggctattcaggctaatttgcgagatacaaca
acccgtgttcttgcttcattaacgccgcgtgaagagcgtgttttacgaatgcgttttggt
attggaatgaacactgatcatacattagaagaagttggtcaacaattttcagttacccgc
gagcgtattcgtcaaatcgaagcaaaggcgcttcgtaagttgaagcatcctagccgttca
cgcaaattacgcagttttcttgattcttaa
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