Bartonella clarridgeiae: BARCL_0736
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Entry
BARCL_0736 CDS
T01394
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcd
Bartonella clarridgeiae
Pathway
bcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BARCL_0736 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcd03400
]
BARCL_0736 (mfd)
Enzymes [BR:
bcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BARCL_0736 (mfd)
DNA repair and recombination proteins [BR:
bcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BARCL_0736 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
DUF7102
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CBI76417
UniProt:
E6YHS9
LinkDB
All DBs
Position
814970..818470
Genome browser
AA seq
1166 aa
AA seq
DB search
MAILKKIIIPKNTHGYMIFDGVVDGFEAFALAKLSAEIAKDKPLVYIVRDGTKMAYLQQA
LNFIKPNLPVLQFPAWDCLPYDRVSPGIIITARRLSALAHMSDLRKNPRSAIILTTANTI
IQKLPPCVMIDEQIIHARVGQCMDMTHLIHYLERNGFERVATVRDIGEFAVRGGIIDIFS
PSYTEPLRLDFFGHTLEAIRVFDSATQRTIANKTELFLQPMSEIILTPKFISRFKSNYIR
VFGVPKKSDMLYEAVSQGRRFPGMEHWLPFFYENLNSFFDHCGNLPVVFEHLIEEVLIER
HRLIEDYYSARRECESNQENAVSYNPIDPNLLYWTPEQVLTCIEQSGQRIDFTPFNISQT
VEQTVIHTNVTQGYDFIKERNALDKNVFSSVVDHIASLRSAGKKVLLAFWSEGSMDRLLQ
VLDEHGLQKVEIAKSLQTVKATPRDRILAAVLMIEHGFEIGDFVIIAEQDILGDRLVRSL
KRRKNKAHFISEITSLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGDRLFL
PVENIELLSRYGSENTNVTLDKLGSAGWQTRKTRLKKHLLKIAGQLICIAAERATRSAPA
LTPPVGLFDEFVACFPYEETDDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVTALNGYQVAVVVPTTLLSRQHYKTFMSRFEGLPVKIAHLSRLVKTKELAQVKKGISEG
TIDIVIGTHALLNDSVNFSRLGLLIIDEEQHFGVKHKERLKKLKSDIHVLTLSATPIPRT
LSLALSGLRELSLITTPPIDRMAVRTFISPFDVMVIRETLLREYYRGGQSFYVCPRISDL
SYVEEYLKTHVPELKFVIAHGQMPARQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLIPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAELKDDEYNTDNQWSPQIS
LGTTVIIPESFVPDLSLRMGLYHRLTELDNLEKIDEFGAELIDRFGPLPLEVQNLLKVFY
IKTLCRKAHVEKLDAGPKGIVIQFRNNYFESGIALVQWIEKQGSMAKIRPDQSIVLIRDW
TTINERLVGATTIMTQLAEMATECAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctatattaaaaaaaattattattccaaaaaatacgcatggttatatgatttttgat
ggtgttgttgacggatttgaagcttttgcacttgctaaattaagtgcagaaattgctaaa
gataaaccacttgtttacattgtccgtgatggaacaaaaatggcttatttacagcaagct
ttaaattttattaaacctaatttacctgttcttcagtttccggcatgggattgtttacct
tatgatcgcgtatcacctgggataattattactgcacgtcggctttcagctttggctcat
atgtcagacctgcgtaaaaatccacgttctgcaattatactaacaacagcaaatacaatt
attcaaaaactgccaccttgtgtaatgattgatgaacaaattatccatgcgcgtgttggt
caatgcatggatatgacacatttgattcattatttagaacgtaatggctttgaacgcgtt
gcaactgtacgtgatattggtgaatttgctgtaagaggaggaattattgatattttttct
cctagttatacagagcctctgcgtcttgatttttttggccataccttagaggcaattcgc
gtatttgattcagctacacaacgaacaatagcgaacaaaacagaattatttttgcagcca
atgagtgaaattatcctcactcctaagttcatcagccgatttaaaagcaattatattcgt
gtttttggtgtacccaaaaaaagtgatatgctttatgaagctgtttcccaagggaggcgt
tttccaggtatggagcattggctcccatttttttatgaaaatcttaatagcttttttgat
cattgtggtaatttacctgttgtttttgagcatctgatagaagaagttctcattgaacgc
catcgccttattgaagattattatagtgctcgcagagaatgcgaaagtaatcaagaaaat
gctgtttcttacaatccaatagatcctaatcttctttattggacaccagaacaagtttta
acatgtatagaacaatctggtcagcgtattgattttacaccttttaatatttcacaaaca
gttgaacaaacagttattcatacgaatgttacacaaggctatgattttataaaagaacgt
aatgctctagataaaaatgttttttcaagtgtggttgatcatattgcttcattacgatct
gctggaaagaaagtacttttggctttttggagtgaaggatctatggatcgtttactgcaa
gttcttgatgaacacgggttacaaaaagtagaaattgcaaaatccttgcaaactgtaaaa
gcgacaccacgtgatcgtatcttagctgctgttctaatgatagaacatggctttgaaatt
ggagattttgttattatagcagaacaagatatccttggtgatcgactagtaagatcacta
aaaaggcgcaagaataaggcgcattttatttctgaaattacttcattaaattctggtgat
atcgttgtacatgttgatcacggtattggacagtttattggtctcaaaactattatgaca
actggaattttacgtgattgtttagaaatcaactatgctggaggcgatcggctatttttg
cccgttgaaaatattgaacttttatctcgttatggatcagaaaacacgaatgtaacattg
gataaattagggagtgctggttggcaaacacgtaaaacacgtcttaaaaagcatttgttg
aaaattgctggtcaattgatctgtatagctgcagaacgcgctacgcgttctgcacctgct
ttaaccccaccagtagggctctttgatgaatttgttgcatgttttccttatgaggaaaca
gatgatcaaatggatgcgattgatgctgttttagatgatttagcatcaggaaaaccaatg
gatcgtttaatctgcggtgatgttggttttggcaaaacagaagttgctattcgaagtgct
tttgttacagcattaaatggttatcaagttgctgttgttgtgccaacaactttactttca
cgacaacattacaaaacctttatgtcacgttttgaagggttaccggttaagattgctcat
ttgtcaaggcttgtaaaaacgaaagaactggcacaagttaaaaaaggtatttcagagggt
actatcgatattgttattggaacacatgcattactcaatgactcagtcaatttttcacgg
ttagggcttcttatcattgatgaagaacagcacttcggagtaaaacataaagagcgtcta
aaaaagctaaaaagtgatattcatgttcttacactttcagctactcctataccaagaact
ttaagccttgctttatcagggttacgtgaactttcattaatcacgactccgcctattgat
agaatggctgtacgtacttttatttcaccttttgatgtgatggttatacgcgaaacatta
ttgcgcgaatattatcgaggtggacaaagcttttatgtttgccctcgtatttctgatctt
tcttatgtagaagaatatctcaaaacgcatgtgcctgaacttaaatttgttatagcacat
ggacaaatgccagctcgacaacttgatgatattatgaatgcattttatgatggacaatat
gacgtattactttcaactaccatcattgaatcaggtcttgatattccgacagcaaataca
ttaattgtgcatcgtgctgaaatgtttggtctttctgcactctaccagttacgtggtaga
gtagggcgttcaaaacaacgcgcttatgcgctttttacttttccttctggcaaagtttta
attcctgcagcagatcgtcgtcttaaagttttacaatctcttgatacattgggtgcaggt
tttcaactagctagtcatgatatggacattcgaggttcaggtaatttattgggtgaagag
caatcaggacatattaaagaagttggttttgaactctaccaaaaaatgcttgaagaggca
gttgctgaattaaaagatgacgaatataacacggataatcagtggtcacctcaaatttct
ctcggtacaacagtgattataccagaaagttttgttcctgatttatcattacgtatgggg
ctttatcatcgtttgacagagcttgataatctagaaaaaattgatgaatttggagctgaa
ttaattgaccgctttggtcctttaccactcgaagttcaaaacctacttaaagtcttttat
ataaaaacattatgtagaaaagcacatgtggaaaaattagatgctggaccaaaggggatt
gttatacagtttcgtaataattactttgaaagtggtattgctcttgttcagtggattgag
aaacaaggctcgatggcaaaaattcggccagaccaaagtattgttcttattcgtgattgg
actacaataaatgaaagacttgttggtgctacaactattatgacacagcttgcagaaatg
gcaacagaatgcgccgcttaa
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