Bartonella clarridgeiae: BARCL_0893
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Entry
BARCL_0893 CDS
T01394
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcd
Bartonella clarridgeiae
Pathway
bcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BARCL_0893 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcd03021
]
BARCL_0893 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcd03400
]
BARCL_0893 (rpoC)
Enzymes [BR:
bcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BARCL_0893 (rpoC)
Transcription machinery [BR:
bcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BARCL_0893 (rpoC)
DNA repair and recombination proteins [BR:
bcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BARCL_0893 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
CBI76574
UniProt:
E6YI86
LinkDB
All DBs
Position
complement(988789..992997)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNHEVMNLFNPQALVQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVVHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAVDEFGEDQFSA
MIGAEAIYELLAGMELDKIANDLRAELAETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKRLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFADMGELHHALE
NKVVTLHTKIKGRFKGINKDGEVVSKLYNTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYSDGLITQSEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDSKTGRKRQMNSIY
MMSHSGARGSASQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTVKGLTMQPIVDSGQIVASLGQRILGRT
ALIDILHPISGEVILEGDAMIEESDVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTLVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYFEASYEGTIEIRNRN
VVRNSEGHLVVMGRNMAILIKDESGKERVVHRISYGARIFVDDGDVVKCGQRIAEWDPYT
RPILTEVDGYIGFEDMVDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIIIHTDEK
GETIAKLYKGGEARYMMSIETILSVEPGSYVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEISGTVRFGRGYKNKRRIIIEPHDESFEPVEYLIPKGKLFHLQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYISGDHVDRIELDEINDNLIAEGKRPAVGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGSTIAQIRRIATVRDDLIVNER
RKSSDGETAKAMLTNMTTSAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaagcactagtgcagacattcgactct
attcgtatttcaattgcgagtcctgagaagattctgtcttggtcatacggtgaaattaaa
aagccagagaccatcaactaccggacatttaagccagagcgtgatggtcttttttgtgca
cgtatatttggccctattaaagattatgaatgtttatgtggaaaatataaacgtatgaaa
tataaaggtattatctgtgagaaatgtggcgtagaagtcactctttcacgggtacgtcgt
gaacgtatggggcatattgagcttgcggctccagtagttcatatttggttccttaagtca
ttacctggtcgtatttctactcttttagatttgactttaaaagatatcgaaagagttctt
tattttgagaattatattgtcacagaaccaggattgacatctcttaagttacatcagctt
ctttctgaagaagaatatatgcttgctgttgatgaatttggggaagaccaattttcagct
atgattggtgcagaggctatttatgagcttcttgctgggatggagttagataaaattgca
aatgatttgcgtgctgaattagctgaaacaacttcagaattaaaacagaaaaaactgatt
aaacgacttaagatcgttgaaaatttccttgaatctggcaataaaccagagtggatgatt
atgaaaactattccagtcattccacctgatttacgtccattggttccattagatggtggt
cgttttgcaacatcagatttgaatgatctctatcgacgtgttatcaaccgtaacaaccgt
ttaaaacgattaattgagctgcgtgctcctggaattattgtccgcaatgaaaaacgtatg
gtacaagaagctgttgatgcattatttgataatggtcgtcgtggacgtgtgattactggg
gcaaataagcgtccattaaaatcgctttcagatatgctaaaaggtaagcaaggacgtttc
cgtcagaatctacttgggaagcgtgttgattattcaggtcgctctgttatcgtgacaggt
cctgaattgaaattacatcaatgtggtcttccgaaaaaaatggctctcgaattatttaag
ccttttatttatgcacgacttgatgcaaagggttattcatctactgtcaaacaggccaag
aggcttgttgaaaaggaacatcccgaagtttgggacatcttagatgaggttattcgtgaa
catcctgttttgctgaatcgtgcaccaacgcttcaccgtttaggaattcaggcttttgaa
cctatcttgattgaagggaaagccatacaacttcatccgttagtgtgtacagcttttaat
gcggattttgacggtgatcagatggctgttcacgttcctctttctcttgaagcacagctt
gaagctcgtgttttgatgatgtcaaccaataatattcttcacccagctaatggtgcgccg
attattgttccatcacaggatatggttcttggtctttactacctttccattgtttctgaa
aaagagccgggtgaagggatggcttttgcagatatgggtgagttgcatcacgctttggaa
aacaaagttgtaactttgcatacaaaaattaaaggccgttttaaaggtatcaataaggat
ggtgaggttgtttccaaactctacaatacaacgcctggtcgtttaattattggtgagctt
ttaccaaaaaatccgaatatttcgtttgatattgttaatcaggaaatgactaaaaagaac
atttctaaaatgattgaccaagtttatagacactgtgggcagaaagaaacggtgattttc
tgtgatcgtatcatgcagcttggtttttcgcatgcttgtcgtgctggaatttcatttggt
aaagacgatatggttattcctgatagtaagtctcgtctagtagcagaaacggaagctctt
gctaaggagtatgagcaacaatatagtgatggtttaattacccaaagtgagaaatataac
aaagttgttgatgcttggggtaaatgtaccgatcgtgttgccgatgagatgatgaagcgt
attcaggcagttgaatttgattctaaaacaggtcgtaaacggcagatgaattcaatttat
atgatgtcgcattctggtgcgcgtggttctgctagtcagatgagacaattggctggaatg
cgtgggttgatggcaaaaccgtcaggtgaaattattgaaacacctattatttctaatttt
aaagaaggtttaactgttaatgagtacttcaattcaactcatggtgcacgtaaaggactt
gctgatactgcattaaagactgctaactctggttatctgacgcggcgtcttgttgatgtt
gcacaagatgctattatttcagcggttgattgtggtactgtaaaaggtcttactatgcag
ccgattgttgattcaggacaaattgttgcttctcttggtcagagaattcttggtcgtaca
gcgcttattgatattttgcatccgatttctggtgaggttatccttgagggtgatgcaatg
atcgaagaatctgatgttgctaagattgaagaagcaggaattcagtctgttcaaatacgt
tctgctttgacctgtgagacgcgtcttggtgtttgcgctaagtgctatggtcgtgattta
gcacgtggaacattagttaatcaaggggaagcagttggtgttattgcagctcaatcaatt
ggtgaaccaggaactcagcttacgatgcgtactttccacttaggtggaacagcacaggtc
gttgactcatcttatttcgaagcgtcttatgagggtacgatagaaattcgtaaccgcaat
gtagttcgaaattctgagggccatttggtggttatggggcgcaatatggctattctgatt
aaggatgagtctggtaaagagcgtgttgtgcatcgcattagttatggtgcacgcatcttc
gttgatgatggtgatgttgtaaaatgtggacagcgtatagcagagtgggatccttataca
cggccaattttgactgaagttgatggttatataggtttcgaagatatggttgatggcttg
tcagttactgaaacagctgatgaatctacaggtattactaagcgtttggttattgattgg
cgtgctaatccacgtggtgctgaactaaaaccagcaattatcattcatacagatgagaag
ggtgaaactattgccaaattgtataaagggggtgaggctcgttatatgatgtcgatagag
acgattctctctgttgaacctggttcctatgttaaggcaggtgatgttattgcacgcttg
ccaatggaaagtgctaaaactaaagatattacgggtggtttgccacgtgtcgctgagctc
tttgaagcacgtcgtccaaaagatcatgctattattgctgaaattagtggtacagttcgg
tttggtcgtggttacaaaaataagcgccgtattatcattgaaccacatgatgaatccttt
gaaccagtagaatatttaattccgaaaggtaaattatttcatttgcaagaaggtgatcag
attgaaaaaggtgattatatccttgatggtaatccagcacctcatgatattttagctatt
aaaggtgttgaagctttagcatcttatcttgttaatgagattcaggaagtttatcgtttg
cagggtgttttgatcaatgataagcatattgaagtgattgttcgacagatgttgcaaaag
gttgaaattacggaatctggtgattctggttatatttcaggtgatcatgttgatcgcatt
gaattagatgaaatcaatgataatctgattgccgaaggtaaaagacctgcagtaggtaat
cctatacttcttggaattacaaaagcatctcttcagacaccctcttttatttcagcagcg
tcatttcaggaaacaacgcgtgtgctcactgaagcagcagtttctggaaaaattgatact
ctgcaagggcttaaggaaaatgttattgttggtcggcttatacctgcaggtacaggtagt
acgattgcccaaattcgtcgtattgctaccgttcgtgatgatctgattgtgaatgagcgc
cgcaaatccagtgatggcgaaaccgcgaaagctatgttaacaaatatgacaactagtgct
gctgaatga
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integrated database retrieval system
