KEGG   Bartonella clarridgeiae: BARCL_0894
Entry
BARCL_0894        CDS       T01394                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bcd  Bartonella clarridgeiae
Pathway
bcd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bcd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BARCL_0894 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bcd03021]
    BARCL_0894 (rpoB)
   03400 DNA repair and recombination proteins [BR:bcd03400]
    BARCL_0894 (rpoB)
Enzymes [BR:bcd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BARCL_0894 (rpoB)
Transcription machinery [BR:bcd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BARCL_0894 (rpoB)
DNA repair and recombination proteins [BR:bcd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BARCL_0894 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: CBI76575
UniProt: E6YI87
LinkDB
Position
complement(993171..997319)
AA seq 1382 aa
MAQTLAMMSQFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRLDEGLQ
AVFKSVFPISDFSGTAMLEFVRYEFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDED
TGSKDIKDIKEQGVYMGDMPLMTHNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSG
KFLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDASDILSTFYNKV
TYECAKNGWRIPYSVDRFKGMKLISDLVDADSGEVVAEAGKKLTVRTARLLEEKGLKAIE
ISEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILSDVGADQINILDIDHMNVGAY
IRNTLKMDKNESRQDALFDIYRVMRPGEPPTINTAEAMFHSLFFDPERYDLSAVGRVKMN
LRMGLDCPDTVRILRQEDIIAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRI
GLLRMERAIKERMSLVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
IESPYRKIVDGRVTKEVIYLSAMEESKHYVAQANSSLDVEGRFTEEFVVCRHAGEVLMAP
RDHIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGMEA
IVACDSGAAIGAKRGGIVDQVDAMRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCINQ
RPLVHVGDRIEKGDIIADGSSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDV
FTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVHPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMA
IEREEIERLAKDRDDEQSILDRSVYARLADILTGKIAIEGPKGFSKGKTLDSTIMEQYPR
YQWWQFVIEDEKIQSEIEALHKQYDESKKALQCRFMDKVEKVQRGDEMPPGVMKIVKVFV
AVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE
THLGWACAGMGKKIGDLIELYQESGDILPLRQRIENLIPDDERNEPVRHYDNESIFKLAL
QMKKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVAGRTKVYEAVVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDACELIGQQTLSDS
ED
NT seq 4149 nt   +upstreamnt  +downstreamnt
atggctcagactttagcgatgatgtctcaatttaatggtcgtaggcgtgtgcgcaagttt
tttggtaagattcctgaagtagcagaaatgccaaatcttattgaagttcagaaagcttca
tatgatcaatttcttatgattgaggaacctgagggcgggcgtttagatgaaggtttgcag
gctgtttttaagtcggtatttcctatttcggatttttccggtacagctatgcttgaattt
gttcgttacgagtttgattcacctaaatttgatgtggaagaatgtcgtcagcgtgatttg
acatatgcagcaccattaaaggtgatactgcgtttaattgtctttgatgttgatgaagat
actggttcgaaagatattaaagacattaaagagcaaggtgtttatatgggcgatatgcct
ttaatgacacacaatggtacgtttgtcattaatggtacagagcgtgttattgtttcgcag
atgcatcgctctccgggtgtcttttttgatcatgataaaggaaaaactcattcatcaggt
aagtttctttttgcagctcgtgtgataccttatcgtggttcttggcttgatattgagttt
gatgctaaagatattgtctatgctcgtattgatcggcgacgcaagattccagtgaccagt
cttttaatggcgttgggtatggatgcatcagatattttatcgacattttataataaagtt
acttatgaatgcgctaagaatggttggcgtattccctattcagttgatcgttttaaggga
atgaaactgatttctgatcttgttgatgcggatagcggtgaagttgtcgcagaggctggt
aaaaagctcacggttcgtactgcaaggcttttggaagaaaaaggtctgaaagcgattgaa
attagtgaagatgatttgttgggatcctatcttgcagaagatatcgtgaattatcaaaca
ggtgaaatttatcttgaagctggtgatgaaattgacgaaaaagcattaaaaattttgtct
gatgttggtgctgatcaaattaatattcttgatattgatcatatgaatgttggtgcatac
attcgtaatactttaaagatggataaaaatgaaagtcgacaggatgctttatttgatatt
tatcgagtaatgcgtccaggtgagccgccgacaattaatacagcggaggctatgttccat
tcattattttttgatccagagcgttatgatctctcagctgttgggcgtgtcaagatgaat
ttgcgtatggggcttgattgtccggatacggttcgcattttgcgtcaagaagatattatt
gctgttgttaagatgttagttgaattgcgtgatggtcgtggtgaaattgatgatattgat
aatcttggcaatcgtcgtgtgcggtcagttggggaattgatggaaaatcaataccggatt
ggtttgcttcgtatggagcgtgcaataaaagaacgtatgtcgttagttgaaattgataca
attatgccacaagatttgattaatgcaaagccagctgcagctgcagttcgtgagtttttt
ggatcttcacaattgtcgcaatttatggatcaaaccaatccattgtcagagatcactcat
aaacgtcgtctttctgctcttggtccaggtggtttaacccgtgagcgtgcaggttttgaa
gtgcgtgatgtgcatcctacacattatggtcgtatttgtccgattgaaacgccggaaggg
ccaaatattggtttgattaattccttagcgacatttgctcgggttaataagtatggtttt
attgaaagtccatatcgcaaaattgttgatggtagagtgacaaaagaagttatttatctt
tctgctatggaggaatcaaaacattatgtagctcaggctaactcttcattagatgtagaa
ggacgttttacagaagaatttgttgtctgtcgtcatgctggtgaagttttaatggcacca
cgtgatcatatagatttgatggacgtttcaccaaaacagttggtttctgtagctgctgca
cttattccatttttggaaaatgatgatgcaaaccgtgctctgatgggatccaatatgcag
cgtcaagcagttccgcttttacgcgcagaagcgccacttgttggtacaggtatggaagca
atagttgcttgtgattcaggtgccgctattggtgcgaaacgtggtggtattgttgatcaa
gttgatgcaatgcgtattgttattcgtgcaacagaggatttagatccttcaaaatctggt
gttgatatctaccgtttacagaaatttcagcgttccaatcaatctacctgtattaatcag
cgtcctctcgtacacgtaggagatcggatagaaaaaggtgatattattgctgacggttca
tctacagaccttggtgatttagctcttggaaggaatgttcttgtagcatttatgccctgg
aatggttacaattatgaggattctattttactttctgagcgtattgttgctgatgatgta
tttacttcgattcatattgaagagtttgaggttgctgcacgtgatacaaagcttgggcca
gaagaaattacccgagatattcctaatgttgcagaagaggcattaaggaatcttgatgaa
gctggtattgtgtatattggtgctgaagtccatcctggtgatattttagttggtaagatt
acgccaaaaggtgaaagtccaatgacgccggaagaaaaacttttacgcgcgatttttggt
gaaaaagcttcagatgttcgtgatacttctatgcgaatgcctcctggaacttttggtact
gttgtagaagttcgtgtttttaaccgtcatggtgtagaaaaagatgaacgtgcaatggca
attgaacgtgaagaaattgaacgtttggctaaagatcgtgatgatgagcaatcaattctc
gatcggagtgtttatgcacgtcttgcggatatattaacaggtaaaattgcgatagaaggt
ccaaaaggattttccaaagggaagacccttgatagtacaataatggagcagtatcctcgg
tatcagtggtggcaattcgttattgaggatgagaagattcagagtgaaattgaagctttg
cataagcagtatgatgagtcaaaaaaagcattgcaatgtcgctttatggataaggttgag
aaagttcaaagaggcgatgaaatgcctcctggtgttatgaaaattgtgaaggtttttgtt
gcagtgaagcgcaaaatccaaccaggggataaaatggcaggacgtcacggtaataaaggt
gttgtgtcacgtattcttccagtagaagatatgccatttcttgaagatggaacgcatgca
gatattgttttgaatcctttgggtgtgcctagtcgtatgaatgttggtcaaattcttgaa
acacaccttggttgggcgtgcgcaggcatgggtaagaaaattggtgatttaatagaactt
tatcaggagagcggagatatattgcctttgcgtcagcgtattgaaaatcttattcctgat
gatgaacgcaatgaaccagttcgccactatgataatgaaagtatttttaagttagcgctt
cagatgaaaaaaggtgtttcgattgcgacacctgtttttgatggagcccatgaagctgat
atcaatatgatgttggaagatgcaggcttagatagttcagggcaagttacgctttatgat
ggccgcactggagagccctttgatcgtccagtgactgtaggatatatctatatgcttaaa
ttgcaccatcttgtggatgataagatacacgcgcgttcaattgggccttattcacttgtt
acgcagcagccgttagggggtaaagctcaatttggtggtcagcgttttggtgaaatggaa
gtttgggcacttgaagcatatggtgctgcatatactttgcaagagatgttgacggttaaa
tcagatgatgtggcgggtcgaacaaaagtttatgaagcagttgttcgtggtgacgacaca
tttgaggcaggtatccctgagagctttaatgtattggttaaagaaatgcgctctcttggt
cttaatgtagagcttgatgatgcatgtgaacttattgggcaacaaacactgtctgattca
gaagattaa

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