Burkholderia cepacia DDS 7H-2: DM42_1023
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Entry
DM42_1023 CDS
T03302
Name
(GenBank) beta-eliminating lyase family protein
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced00260
Glycine, serine and threonine metabolism
bced00460
Cyanoamino acid metabolism
bced00630
Glyoxylate and dicarboxylate metabolism
bced00670
One carbon pool by folate
bced00680
Methane metabolism
bced01100
Metabolic pathways
bced01110
Biosynthesis of secondary metabolites
bced01120
Microbial metabolism in diverse environments
bced01200
Carbon metabolism
bced01230
Biosynthesis of amino acids
bced01240
Biosynthesis of cofactors
bced04981
Folate transport and metabolism
Module
bced_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DM42_1023
09102 Energy metabolism
00680 Methane metabolism
DM42_1023
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DM42_1023
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
DM42_1023
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
DM42_1023
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
DM42_1023
Enzymes [BR:
bced01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
DM42_1023
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
AIO48581
LinkDB
All DBs
Position
1:complement(1120948..1122195)
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AA seq
415 aa
AA seq
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MFDRAQSTIANVDPEIFAAIEQENRRQEDHIELIASENYTSPAVMAAQGSQLTNKYAEGY
PGKRYYGGCEYVDVVEQLAIDRVKQLFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGM
SLAHGGHLTHGSSVNMSGKWFNVVSYGLNENEDIDYDAAEKLANEHKPKLIVAGASAFAL
KIDFERLAKIAKSVGAYLMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVI
LMKAEYEKPINSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFKEYQQKVVENARVLAETL
VKRGLRIVSGRTESHVMLVDLRAKHITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGI
RLGSPAMTTRGFGPAEAEQVGNLIADVLENPEDAATIERVRAQVAELTKRFPVYR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacagagcccaaagcaccatcgcgaacgtcgatcccgaaatctttgcagcgatc
gagcaggaaaaccgccgccaggaagatcacatcgagctgatcgcgtcggaaaactacacg
agcccggccgtgatggccgcgcagggctcgcagctcacgaacaagtacgcggaagggtat
ccgggcaagcgctactacggcggttgcgagtacgtggacgtggtcgagcagctggcgatc
gaccgcgtgaagcagctgttcggcgcggaagcggcgaacgtgcagccgaactcgggttcg
caggcgaaccagggcgtgttcttcgcgatgctcaagccgggcgacacgatcatgggcatg
agcctcgcgcacggcggccacctgacgcacggctcgtcggtgaacatgtcgggcaagtgg
ttcaacgtggtgagctacggcctgaacgagaacgaagacatcgactacgacgcggctgag
aagctggcgaacgaacacaagccgaagctgatcgtcgcgggcgcatcggcattcgcgctg
aagatcgatttcgagcgtctggcgaagatcgcgaagtcggtcggtgcatacctgatggtc
gacatggcgcactacgcaggcctgatcgcggcgggcgtgtacccgaacccggtgccgcac
gcggatttcgtgacgacgacgacgcacaagagcctgcgcggcccgcgcggcggcgtgatc
ctgatgaaggcggaatacgagaagccgatcaactcggcgatcttcccggggatccagggc
ggcccgctgatgcacgtgatcgcggcgaaggcggtggcgttcaaggaagcgctgtcgccg
gagttcaaggaataccagcagaaggtggtcgagaacgcacgcgtgctggccgaaacgctg
gtcaagcgcgggctgcggatcgtgtcgggccgtacggaaagccacgtgatgctggtggac
ctgcgcgcgaagcacatcacgggcaaggcggcggaagcggcgctcggcgcggcgcacatc
acggtgaacaagaacgcgattccgaacgacccggaaaagccgttcgtgacgagcggcatc
cgtctcggctcgccggcgatgacgacgcgtggcttcgggccggcggaagccgagcaggtg
ggcaacctgatcgccgacgtgctggagaacccggaagacgcagcgacgatcgagcgcgtg
cgcgcgcaggtcgccgagctgaccaagcgtttcccggtctatcgctga
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