Burkholderia cepacia DDS 7H-2: DM42_1080
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Entry
DM42_1080 CDS
T03302
Symbol
pcnB
Name
(GenBank) poly(A) polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM42_1080 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bced03019
]
DM42_1080 (pcnB)
Enzymes [BR:
bced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
DM42_1080 (pcnB)
Messenger RNA biogenesis [BR:
bced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DM42_1080 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AIO49251
LinkDB
All DBs
Position
1:1190964..1192514
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AA seq
516 aa
AA seq
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MIKKFIRKLLGQDETEQTPPAAAPADAAAPAAPRTPKGARGGGAKKPRSNHEPTVVPASV
HGINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLF
RRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDA
SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR
FREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALA
CLQRLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWH
DMRQRFEQYTAAGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRSG
RSAMRLLEHQRFRAGYDFLLLRCESGELDAEVGQWWTDFIEGDAAAREALLTQGGSKEKS
PRKRRRRGGARNRKPGEGAAEQAPDTAGDTASGSDD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaaaaattcatccgcaagctgctcggccaggacgaaaccgagcaaacgcctccc
gccgcggccccggccgacgcagcggcccctgctgccccgcgcaccccgaagggcgcccgc
ggcggcggcgcgaagaaaccgcgcagcaaccatgagccgaccgtcgtgccggccagcgtg
cacggcatcaacccggcgctgatctcgaagaacgcggtgcgcgtgaccgacacgctgcag
caggcgggctttcgcgcgttcatcgtcggcggcgccgtgcgcgacctgctgctcggcatc
gcgccgaaggacttcgacgtcgcgaccgacgcgacgccgaccgaggtgcagcgcctgttc
cgccgcgcgcgcctgatcggccgccgcttccagatcgtgcacgtgcagttcggccaggaa
ctgatcgaggtgtcgacgttccgcgcgctggtcgacgcgccgcccgaggcggccacggcc
gaaccgccgaagcgcctgaagcgcgacgaactcgatcgccgcacgcacgcggtcgacgcg
agtggccgcgtgctgcgcgacaacgtgtggggcgagcagcatgaggacgccgcgcgccgc
gacttcacgatcaacgcgatgtactacgacccgtcgacgcagacggtgctcgactaccac
gacgggatggccgacgtgcgcgcccgcctgttgcggatgatcggcgatccggccacgcgc
ttccgcgaggatccggtgcggatgctgcgcgtcgtgcgcttcgcggcgaagctcggcttc
gagatcgaaccgcatacgcgcgagccgatccacgcgctcgccgacctgatcaacaacgtg
ccggccgcgcgcctgttcgacgaaatgctgaagctgctgctgtcgggccacgcgctcgcg
tgcctgcagcggctgcgcaaggaagggctgcaccacgggctgctgccgctgctcgacgtc
gtgctggaacagccgcagggcgagaagttcatcacgctcgcgctgaacaacaccgacgcg
cgcgtgcgcgccggcaagccggtgtcgccgggcttcctgttcgcgacgctgctgtggcat
gacatgcgccagcgcttcgagcaatacaccgccgcgggcgagatcccggtgccggcgctc
catcgcgcgatggacgacgtgctcgacatgcagaccgagaagctcgcgatccacaagcgc
tactcggccgacatgcgcgagatctggggcctgcagctgcgcctcgagaaacgctcgggc
cgcagcgcgatgcggctgctggaacaccaaaggtttagagcggggtatgatttcctcctg
ttacgctgcgaatccggcgagctcgatgcggaagtcggacagtggtggacggatttcatc
gaaggcgacgcggccgctcgcgaggcattgctcacgcagggcggctcgaaggaaaaatcg
ccccgcaagcggcggcgccgcggcggggcgcgcaaccgcaagccgggtgaaggtgccgcc
gagcaggcaccggataccgcaggcgataccgcgagcggttccgacgactga
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