Burkholderia cepacia DDS 7H-2: DM42_1480
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Entry
DM42_1480 CDS
T03302
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM42_1480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bced03021
]
DM42_1480 (rpoC)
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_1480 (rpoC)
Enzymes [BR:
bced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM42_1480 (rpoC)
Transcription machinery [BR:
bced03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM42_1480 (rpoC)
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM42_1480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AIO48776
LinkDB
All DBs
Position
1:complement(1610167..1614408)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLSFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDTSEGAPEFVPKITLYATTVGRAILSEILPHGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GIVRFTATMRYVTNAKGEQIVISRSGEAMITDDFGRERERHKVPYGATLLQLDGATIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEGKRPASYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKES
SDRERFDQIAAEEAFDFGTPSAPAEEPQHPAAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagttttcgacgcgatc
aagatcggtctggcctcgcccgacaagatccgttcgtggtcgttcggcgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagccggaacgcgatggtctgttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgcgaa
cggatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcgtacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgaaatg
ggcgcggaaggcgtgcgtgaactgctgcgcgcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacacgggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgttcgggcatcaagcccgagtggatgatcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctcgatggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggcctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctggaagtgatgggggtagctacgaccatcaaggctgcgaagaaggag
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgtgcgccgacgctgcaccgtctcggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcaatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctgtcgttcacgggcgtgtcggaagtcatccgcgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccgcaacgaggac
acgtcggaaggcgcgccggaattcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgcacggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacacggcattccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgaccagctgatgcagtcgggtttccgtctcgcgacgcgtgcc
ggcatctcgatctgcgtggacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgatcgatcgcgacggcaacgagacgcgc
caggagtcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtt
cagattcgtcagctggccggtatgcgaggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtcacgcaggatctggtcgtggtggaagacgattgcggc
acgtcgaacggcgtggcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtatcctcggccgcgtcgcggtcgcggacgtcgtgaatccggaaacgcaggaa
acgctgtacgaatcgggcacgctgctcgacgaaacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgttacggcctgtgc
gcagcctgctacggccgcgacctcggccgcggctcgctcgtgaacgtcggcgaagcagtc
ggcgtgatcgcggcgcagtcgatcggtgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcttcgtcggtcgaagcgaagagcaac
ggtatcgtccgcttcacggcgacgatgcgctacgtcacgaacgcgaagggcgagcagatc
gtcatttcccgttcgggcgaagcgatgatcaccgacgacttcggtcgcgagcgcgagcgt
cacaaagtgccgtacggcgcgacgctgctgcagctcgacggcgcgaccatcaaggccggc
acgcagctcgccacgtgggatccgctgacgcgcccgatcatcaccgagtacggtggtacg
gtgaagttcgagaacgtcgaggaaggcgtgaccgtcgcgaagcagatcgacgacgtgacc
ggcctgtcgacgctggtcgtgatcgacgtgaagcgccgcggttcgcaggcttcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgaggaagtgaagattccgggcacg
gagcacgcagtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggatggtcag
caggtgcaggtcggtgaagtgctcgcacgtatcccgacggaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaagcgcgttcgccgaaggatgcc
ggcattctcgcggaagtcaccggtacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctggttcacgatgcacaggtcgtcaacaagggcgaaatgatcgtggacggtccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggtgatacgcgcttc
atcccgggcgaacaggtcgaacgttccgacatgctggacgagaacgatcgcatgatcgcc
gaaggcaagcgcccggcttcgtacgacaacgtgctgctcggtatcacgaaggcatcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcacgcaaggcgaaggaatcg
tcggatcgcgagcgtttcgaccagatcgcagcggaagaggcattcgacttcggcacgccg
agcgcgccggcggaagagccgcaacacccggcagccgagtaa
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integrated database retrieval system
