Burkholderia cepacia DDS 7H-2: DM42_2400
Help
Entry
DM42_2400 CDS
T03302
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM42_2400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bced03019
]
DM42_2400
Enzymes [BR:
bced01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM42_2400
Messenger RNA biogenesis [BR:
bced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM42_2400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
SNF2-rel_dom
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CMS1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AIO47157
LinkDB
All DBs
Position
1:complement(2593191..2594639)
Genome browser
AA seq
482 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGGGGNRQPRAGGSGQPAAKR
DGHAQPKAAQQKAAKPRTQGGAGAGGNGGGRPAGGGNGARPANGNAAHANRNRSSRSGQR
GH
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctagccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgaccccgatccagcagcaggcgatcccggccgtcctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcaccgtggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtccgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgatcac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgtcagaacctgctgttctcggccaccttctccgatgaaatcaaggcgctcgccgac
agcctgctcgactcgcccgccctgatcgaagtcgcgcgccgcaacacgaccgccgagagc
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctggtgttcacgcgcaccaagcacggcgcgaac
cggcttgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccgcacgggccgcgcg
ggtgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagatcccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcagcgccgcgggcagcagcaaccgcgtggcggt
ggcggcggcggcaatcgccagccgcgcgccggcggctcaggccagccggccgcgaaacgc
gacggccacgcgcaaccgaaggccgcgcagcagaaggccgcgaagccgcgcacgcaaggc
ggtgccggcgccggtggtaacggcggcggacgtccggcgggcggcggcaacggcgcccgc
ccggcgaacggcaacgccgcgcacgcgaaccgcaaccgttcgtcgcgcagcggccagcgc
ggtcactga
DBGET
integrated database retrieval system
