Burkholderia cepacia DDS 7H-2: DM42_2745
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Entry
DM42_2745 CDS
T03302
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03030
DNA replication
bced03430
Mismatch repair
bced03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM42_2745 (dnaE)
03430 Mismatch repair
DM42_2745 (dnaE)
03440 Homologous recombination
DM42_2745 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bced03032
]
DM42_2745 (dnaE)
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_2745 (dnaE)
Enzymes [BR:
bced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM42_2745 (dnaE)
DNA replication proteins [BR:
bced03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM42_2745 (dnaE)
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM42_2745 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AIO48585
LinkDB
All DBs
Position
1:2962582..2966115
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AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAE
AYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIA
SVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKAALGFYLSGH
LFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADALALRRVLEPHVSKDDPAAANVIEAPAPRGGGRDGGRRPQAPLPNGLAVQIHYSNA
RAQGEMRLGDAWRVKPSDVLLAELRAAFDGSSAEIVY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgcattgacgacatcgtcaaggcggcggccgcggacggtcagggcgcgctcgcg
ctcaccgatctcggcaacgcattcggcctcgtccgtttctaccaggaagcccgcggcaag
ggcatcaagccgatcgccggctgcgacgtctggattgccaatccggacgaccgcgacaag
ccgtcgcggctgctgctgctggtcaaggacaaggtcggttacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagtaccgcggccgcgcggaactcgacgcgagctgg
ctcgacggcgagctcgcgcaggggctgctcgcgctgtcgggcgcgcaacagggcgatatc
gggctcgcgctggccgcgggcaacgaagaagccgcgcgccgtcacgccgagcgctgggcg
agggtgttcccgggcggcttctacatcgagctgcagcgttacggccagccgggcgccgag
gcgtacatccagcaggcggcgacgctcgccgcgtcgctgaagctgccggtcgtcgcgacg
cacccgacgcagttcatgaccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaacccgcggcgccagaagcgtttcacgaccgaccagtat
ttccgcacgcaggacgacatggccgcgctgttcgccgacctgccgtcggcgatcgccaac
acggtcgagatcgcgaagcgctgcaacctgaagctcgagctcggcaagccgaaactgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctgtcgaaggag
gggctcgaaacccgcctcgcgcagttgtatccggtcgaagccgagcgcgacgcgcagcgc
gacacgtactacaagcgcctcgaattcgagtgcgggaccatcacgaagatgggcttcccc
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccgcggctcgggcgccggttcgctggtcgcgtacgcgctcggcattaccgac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaatccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggagaaatacggcgcggacgccgtctcgcagatcgccacgttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgattccgttcaagcccggcaagcacgtgacgattgccgacgcgatgaag
gaagaaccgcagctgcaggagcgctacgaccacgaggacgaagtccaccagctgctcgat
ctcgcgcagcgcgtcgagggcctcacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtggtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctcacgacgctgacgatcctcgactgggccgagcgctacatccgccgtctcgat
ccgtcgaaggcagactggtcgctcgcgcaggtgccgctcgacgatccggcgtcgttccag
atcctgaagaaggccaacacggtcgcggtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cggccgggcccgatggacctgatcccgagcttctgcgcgcggaagcacggccgcgagaag
gtcgaatacccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggtcaagcaccgcgag
atcttcgccgagggggccgcgaagaacggcctcacgcgcgagaagtccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtatgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcg
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcgtc
gtgaacaacctcgccgtgctgccgccggacatcaaccagtcgcattaccggttcgagccg
gtcgcggaagccgacggcaagcgctcgcgcacgatccgctacggcctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgcgcccgcgaggaaaaggcgttcacc
gacctgttcgacttctgcgaacggatcgaccggcgcgtcgtcaaccgccgcacggtcgag
gcgctgatccgcgccggcgcgttcgattcgctgaatccgaaccgtgcgcaactgatcgcg
tcggtgccgctcgcgatggaagcggccgaccaggccgaagcgaacgcgatgcaggccggc
ctgttcgacatgggcgccgagtcgccgcacgcgcatgcgctcgtcgacgaacccgcgtgg
gacgacaagcgccgcctgcaggaagaaaaggccgcgctcggtttctatctgtccggccac
ctgttcgatgcgtatcgcgacgaagtgcggcgcttcgtgcggcagaaggtcggtgacctg
aaggaagggcgcgacaagctcgtcgccggcatcatcgcgtcgctgcgcacgcagatgacg
cagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgcgagatcacg
atcttcaacgaacagttcgaggcgaacaaggcgctgttcaaggaagacgagctgctgatc
gtgcaggggcaggcgcgcaacgacgcgttcaccggcggcattcgcttcacggccgatacc
gtgatggatctcgaacgcgcgcgcagccgctacgcgcaggccgtgcggctgacgatgaac
ggcaacgccgacgcgctcgcgctgcgccgtgtgctcgagccgcacgtgtcgaaggacgat
ccggccgccgcgaacgtgatcgaagcgcccgcgccgcgcggcggcgggcgcgatggcggt
cggcgcccgcaggcgccgctgccgaacgggctcgcggtgcagatccactacagcaacgcg
cgcgcgcaaggcgaaatgcgtctgggcgatgcctggcgcgtgaaaccgagcgacgtgctg
ctggcagagctgcgcgcggcgttcgacggtagttccgccgaaatcgtctactga
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