Burkholderia cepacia DDS 7H-2: DM42_3056
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Entry
DM42_3056 CDS
T03302
Name
(GenBank) uracil-DNA glycosylase, 4 family protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DM42_3056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_3056
Enzymes [BR:
bced01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
DM42_3056
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DM42_3056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Uma2
Motif
Other DBs
NCBI-ProteinID:
AIO48797
LinkDB
All DBs
Position
1:3297117..3298148
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AA seq
343 aa
AA seq
DB search
MAWAEAALEELGLAQIWVRRGQRADEGAAAEAPAVAPTAAADDGSAVAVERPVRAAHAPV
QGDAPTAVPRGAAEGLPARESRAPAHGVVDGDRPRAQAASPASTDTMPPTGDAPPAADDD
FAWFDAAPPGESVPVPAAESRPAGAPVAALDWDALAARVADCTLCRLCEKRTNTVFGVGD
READWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNR
NPEPDEVASCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVI
VTYHPAYLLRSLQDKSKAWADLCLARNTFRRAEGADANGPAGQ
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggcatgggctgaagcggcgctcgaggaactgggcctcgcgcagatctgggtgcggcgc
gggcagcgcgcggatgaaggcgcggcagccgaagcgcctgccgtcgcaccaaccgcggcg
gccgacgacggttcggccgtcgcggtcgagcggccggtgcgtgcagcgcatgcgccggtg
cagggcgatgcgccgacggcggtcccgcgtggcgctgccgagggcttgccggcgcgcgag
tcgcgggcgccggcgcacggtgtcgtcgacggcgatcgtccgcgcgcgcaggctgcatcg
cccgcatcgaccgatacgatgccgccgacgggcgatgcgccgccggcggcagacgacgat
ttcgcgtggttcgacgcggcgccgccgggcgaatccgtgcccgtgccggccgccgaatcg
cgccccgccggcgcaccggtcgccgcgctcgactgggatgcgctggccgcccgcgtggcc
gactgcacgctgtgccgtctgtgcgagaagcggaccaacaccgtgttcggcgtcggcgat
cgcgaagcggactggatgctgatcggcgaagcgccgggcgagaacgaggacaagcagggc
gagccgttcgtcggccaggccggcaagctgctcgacaacatgctgcagtcgctgtcgctc
aagcgcggcgacaacgtttacatcgcgaacgtgatcaagtgccggccgcccggcaaccgc
aacccggagccggacgaagtcgcgagctgcgagccgtatctgcagcgccaggtcgcgctc
gtgaagccgaagctgatcgtcgcgctcggccgtttcgcggcgcagacgctgctgaagaca
gacgcgagcatcgcgtcgctgcgcggccgcgtgcatgcgtacgaaggcgtgccggtgatc
gtcacctaccacccggcctatctgttgcgcagcctgcaggacaagtcgaaggcgtgggcc
gacctgtgcctcgcgcgcaatacgttccggcgtgcggaaggcgccgacgcgaacggcccg
gccgggcaatga
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