Burkholderia cepacia DDS 7H-2: DM42_3271
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Entry
DM42_3271 CDS
T03302
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM42_3271 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bced03021
]
DM42_3271 (rho)
03019 Messenger RNA biogenesis [BR:
bced03019
]
DM42_3271 (rho)
Transcription machinery [BR:
bced03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DM42_3271 (rho)
Messenger RNA biogenesis [BR:
bced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DM42_3271 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIO49589
UniProt:
A0A081V4G5
LinkDB
All DBs
Position
1:complement(3528378..3529640)
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AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtctctgcacgtgtccgaactgatcgaaatggccaacggc
ctggagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgtttgccattctcaaa
aagcgcgccaagacgggagagacgatcttcggcgacggtacgctcgaagtgctgccggac
ggcttcggcttcctgcgctcgccggaaatgtcgtacctcgcgagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaagtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtcgctcgaacgcgaaatgcgcggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgctccagcacatcgcgcatgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgctcggtcgccggcgaagtgatcgcgtcgacgttcgacgaaccggccacgcgccacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgacgtc
gtgattctgctcgactcgatcacgcgtctcgcgcgtgcgtacaacaccgtgatcccggca
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcgctgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggttcgctgacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtgtatccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaggaaatgctgatcaagcccgagatccttcagaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaggcaatggaattcctgctg
gacaagatccgccagacgaagagtaactccgagttcttcgacctgatgcgccgcggcggc
tga
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