Burkholderia cenocepacia DDS 22E-1: DM39_157
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Entry
DM39_157 CDS
T03308
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM39_157 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcen03021
]
DM39_157 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_157 (rpoC)
Enzymes [BR:
bcen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM39_157 (rpoC)
Transcription machinery [BR:
bcen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM39_157 (rpoC)
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM39_157 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AIO33736
UniProt:
A0AAN0VN96
LinkDB
All DBs
Position
1:173151..177392
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEQLRTELKNTGSEAKIKKFAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEVLRAYENK
EVELASRVNVRITEMVRNEDTSEGAPEFVPKVTLYATTVGRAILSEILPHGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYEAGTLLDEVAVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GIVRFTATMRYVTNAKGEQIVISRSGEALITDDFGRERERHKVPYGATLLQLDGATIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEGKRPASYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKES
SDRERFDQIAAEEAFDFGTPSTPAEEPQHPAAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagttttcgacgcgatc
aagatcggtctggcctcgcccgacaagatccgttcgtggtcgttcggcgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagccggaacgcgatggtctgttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgtgag
cggatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgcgcgatcaacatcgacgagcaggtcgaacag
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagttcgcgaagcgc
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctcgag
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctggacggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaggccgtcgactcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgccaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggcctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctggaagtgatgggcgttgcgacgaccatcaaggcggcgaagaaggaa
gtcgagaaccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgtgcgccgacgctgcaccgtctcggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcaatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctgacgttcacgggcgtgtcggaagtgctgcgcgcgtacgagaacaag
gaagtcgagctcgcgtcgcgcgtcaacgtgcggatcaccgaaatggtccgcaacgaggac
acctcggaaggcgcgccggaattcgtgccgaaggtcacgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgcacggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgatcagctgatgcagtcgggtttccgtctcgcgacgcgcgcc
ggcatctcgatctgcgtggacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcagaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgacggaccgcgacggcaacgagacgcgc
caggagtcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctccattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgctgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctggtcgacgtcacgcaggatctggtggtggtcgaggacgattgcggc
acgtcgaacggcgtcgcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtatcctcggccgcgtcgcggtggcggacgtcgtgaacccggaaacgcaggaa
acgctgtacgaagcgggcacgctgctcgacgaagtggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgctacggcctgtgc
gcatcgtgctacggccgcgacctcggccgcggctcgctggtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcctcgtcggtcgaagcgaagagcaac
ggtatcgtgcgtttcacggcgacgatgcgctacgtcaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgctgatcaccgacgacttcggtcgcgagcgcgagcgt
cacaaagtgccgtacggcgcgacgctgctgcagctcgacggtgcgacgatcaaggccggt
acgcagctcgccacgtgggatccgatgacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacc
ggtctgtcgaccctggtcgtgatcgacgtgaagcgccgcggttcgcaggcatcgaagagc
gtgcgtccgcaggtcaagctgctcgacgcgaacggcgaggaagtgaagatcccgggcacc
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcaccggcacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggacctcgaaggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgacgcccaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttc
atcccgggcgaacaggtcgagcggtccgacatgctggacgagaacgatcgcatgatcgcc
gagggcaagcgtccggcttcgtacgacaacgtgctgctcggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggtctcgcgttccacaaggcgcgcaaggcgaaggaatcg
tcggatcgcgagcgtttcgaccagatcgcagcggaagaagcgttcgacttcggtacgccg
agcacgccggccgaagaaccgcagcacccggcagccgagtaa
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integrated database retrieval system
