Burkholderia cenocepacia DDS 22E-1: DM39_1854
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Entry
DM39_1854 CDS
T03308
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03030
DNA replication
bcen03430
Mismatch repair
bcen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM39_1854 (holB)
03430 Mismatch repair
DM39_1854 (holB)
03440 Homologous recombination
DM39_1854 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcen03032
]
DM39_1854 (holB)
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_1854 (holB)
Enzymes [BR:
bcen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM39_1854 (holB)
DNA replication proteins [BR:
bcen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM39_1854 (holB)
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM39_1854 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA_16
NACHT
TsaE
YAcAr
Motif
Other DBs
NCBI-ProteinID:
AIO34215
UniProt:
A0AAN0RUD1
LinkDB
All DBs
Position
1:complement(2018269..2019297)
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AA seq
342 aa
AA seq
DB search
MIYPWQTDDWNRLQQLRAQWPHALLLHGQAGIGKLQFAQHLAQGFLCEAPQPNGEPCGTC
AACTWFAQGNHPDYRIVLPEALAGEAPGAADDAKSADADEGGKKTRAPSKEIKIEQVRAL
LDFCGVGSHRGGARVVVLYPAEALNVAASNALLKTLEEPPPGVVFVLVSARIDRLLPTII
SRCRQWPMSVPAPDAAAAWLAAQGVDDAPALLAEAGGAPLAALALASDENRPLRDFTLGQ
LAAGAGCDPFACGEALQKLPVPLVLGWLQRWLYDLLAQRMAGAPRYFPTHAAALARCAQT
VDANAFARFMKAVTRQRTVENHPLNARLVFEELFLGYREIFA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgatctacccgtggcagaccgacgactggaaccgactgcagcagctgcgcgcgcaatgg
ccgcatgcgctgctgctgcacggccaggccgggatcggcaagctgcagttcgcgcagcat
ctcgcacagggcttcctgtgcgaagcgccgcagccgaacggcgagccgtgcggcacctgc
gcggcctgcacgtggttcgcgcagggcaatcatccggactaccggatcgtgctgcccgag
gcgctggccggcgaggcgccgggcgccgcggacgacgcgaagtcggccgatgccgacgaa
ggcggcaagaagacccgcgcgccgagcaaggaaatcaagatcgagcaggtgcgcgcgctg
ctcgatttctgcggcgtcggctcgcaccgcggcggcgcgcgtgtggtcgtgctgtatccg
gccgaggcgctgaacgtcgccgcgtcgaacgcactgctgaaaacgctcgaggaaccgccg
cccggcgtcgtgttcgtgctcgtgtcggcgcgcatcgaccgcctgctgccgaccatcatc
agccgctgccggcagtggccgatgagcgtgccggcgcccgacgcggccgcggcatggctc
gcggcgcaaggcgtcgacgacgcgcccgcgctgctcgccgaggccggcggcgcgccgctt
gccgcattggcgctcgcgagcgacgagaaccggccgctgcgcgatttcacgctcggccag
ctcgcggccggcgcggggtgcgacccgttcgcgtgcggcgaggcgctgcagaagctgccc
gtgccgctggtgctcggctggctgcagcgctggctgtacgatctgctggcgcagcggatg
gcgggcgcgccgcgctacttcccgacgcatgcggcggcgctcgcgcgctgcgcgcagacg
gtcgatgcgaacgcgttcgcgcgcttcatgaaagccgtcacgcggcagcggaccgtcgaa
aaccatccgctcaacgcgcggctcgtgttcgaggaattgtttctcggatatcgggaaata
tttgcttga
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