Burkholderia cenocepacia DDS 22E-1: DM39_2424
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Entry
DM39_2424 CDS
T03308
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03030
DNA replication
bcen03430
Mismatch repair
bcen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM39_2424 (dnaE)
03430 Mismatch repair
DM39_2424 (dnaE)
03440 Homologous recombination
DM39_2424 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcen03032
]
DM39_2424 (dnaE)
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_2424 (dnaE)
Enzymes [BR:
bcen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM39_2424 (dnaE)
DNA replication proteins [BR:
bcen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM39_2424 (dnaE)
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM39_2424 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
DUF655
Motif
Other DBs
NCBI-ProteinID:
AIO32197
UniProt:
A0AAN0RQS9
LinkDB
All DBs
Position
1:complement(2637254..2640799)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWITNPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDPGW
LDGELSEGLLALSGAQHGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAE
AYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLSQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAFDSLNTNRAQLLA
SVPLAMEAADQAEANALQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKVGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADATALRRVLEPHVSKDDPAAANAVEAPAPRGGGRGGGRDGGRRPQPPLPNGLAVQIH
YSNARAQGEMRLGDAWRVKPSDTLLAELRAAFDGSTVEITY
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgtctcgacgacatcgtcaaggcggcggccgcggacggccagggcgcgctcgcc
ctgaccgatctcggcaacgcattcggcctcgtccgtttctatcaggaagcccgcggcaag
ggcatcaagccgatcgccggctgcgacgtctggatcaccaatccggacgatcgcgacaag
ccgtcgcgtctgctgctgctcgtgaaggacaagcgcggctacctgaatctgtgcgagctg
ctgtcgaaggcatggctcacgaaccagtatcgcggccgcgcggagctcgacccgggctgg
ctcgacggcgaactgtcggagggcctgctcgcgctgtcgggtgcgcagcacggcgatatc
ggcctcgcgctcgcggccggcaacgaggaagccgcacgccgccatgcgcagcgctgggcg
aaggtgttcccgggcggcttctacatcgagctgcagcgctacgggcagcccggcgcggaa
gcgtacatccagcaggccgcgacgctcgccgcgtcgctgaagctgccggtcgtcgcgacg
catccgacgcagttcatgaccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaacccgcggcgccagaagcgcttcacgaccgaccagtat
ttccgcacgcaggacgagatggtcgcgctgttcgccgacctgccgtcggcgatcgcgaac
accgtcgagatcgccaagcgctgcaacctgaagctcgagctcggcaagccgaagctgccg
ctgttcccgacgcccgacggcatgtcgctcgacgactacctggtccagctgtcgaaggag
gggctcgaaaagcgcctcgcgcagttgtatccggacgaagccgagcgcgacgcgcagcgc
gacacgtattacaagcgcctcgagttcgaatgcgggaccatcacgaagatgggcttcccg
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
gggccgggccgcggctcgggcgccggttcgctggtcgcctacgcgctcggcattaccgac
ctcgacccgctgcgctacaacctgctgttcgagcgcttcctgaacccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatccagtacgtg
aaggagaagtacggcgcggacgcggtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagcccggcaagcacgtgacgattgccgacgcgatgaag
gaagagccgcagctgcaggagcgctacgacaacgaggacgaggtgcaccagctgctcgac
ctcgcgcagcgcgtcgagggcctgacgcgcaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtcgtgagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggcctgaccacgctgacgatcctcgactgggccgagcgctacatccgccgtctcgat
ccgtcgaaggccgactggtcgctgtcgcaggtgccgctcgacgatccggcgtcgttccag
atcctcaagaaggccaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcacgcaagcacggccgcgagaag
gtcgagtatccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgtcgtgcgatgggcaagaaaaagcccgaggagatggtcaagcaccgcgag
atcttcgccgagggtgcggcgaagaacggcctgtcgcgcgagaagtccgacgagatcttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtatgcg
ctgctcgcctattacaccgcatggttgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcatc
gtgaacaacctcgtcgtgctgccgcccgacatcaaccagtcgcactaccgattcgagccg
gtcgccgaagccgacggcaagcgctcgcgcacgatccgctacgggctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgcgcccgcgaggaaaagccgttcacg
gatctgttcgatttctgcgagcgcatcgaccgccgcatcgtgaaccgccgcaccatcgag
gcgctgatccgcgccggcgcattcgattcgctgaatacgaaccgcgcgcagctgctcgcg
tcggtgccgctcgcgatggaagcggccgaccaggccgaggcaaacgcattgcaggccggc
ctgttcgacatgggcgccgagtcgccgcacgcgcatgcgctcgtcgacgagcccgcgtgg
gacgacaagcggcgcctgcaggaagaaaagggtgcgctcggcttctacctgtcgggccac
ctgttcgacgcgtatcgcgacgaggtgcgccgcttcgtgcggcagaaggtcggcgagctg
aaggaagggcgcgacaagctcgtcgccggcatcatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggcaccggccagtgcgaaatcacg
atcttcaacgagcagttcgaggcgaacaaggcgctgttcaaggaagacgaactgctgatc
gtgcaagggcaggcgcgcaacgatgcgtttaccggcggcatccgcttcacggccgatacg
gtgatggacctcgaacgcgcgcgcagccgctacgcgcaagccgtgcggctgacgatgaac
ggcaatgccgatgcgacggcattgcgccgcgtgctcgagccgcatgtgtcgaaggacgat
ccggcggcggcgaacgcggtcgaggcgcccgcgccgcgcggcggcggacgcggcggcgga
cgcgacggcggccggcgtccgcagccgccgctgcccaacgggctcgcggtccagatccac
tacagcaatgcgcgcgcgcagggcgaaatgcggcttggcgatgcgtggcgcgtgaagccg
agcgatacgctgctcgcggaactgcgcgcagccttcgacggcagcacggtcgaaatcacc
tactga
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integrated database retrieval system
