Burkholderia cenocepacia DDS 22E-1: DM39_2762
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Entry
DM39_2762 CDS
T03308
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM39_2762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcen03019
]
DM39_2762
Enzymes [BR:
bcen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM39_2762
Messenger RNA biogenesis [BR:
bcen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM39_2762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Ric8
P-loop_SecA
Sacchrp_dh_NADP
DegT_DnrJ_EryC1
Cas3-like_C_2
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AIO31281
UniProt:
A0AAN0VL45
LinkDB
All DBs
Position
1:3005741..3007177
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AA seq
478 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPRGGGGGGGGNRAPRAGGSAQPAAK
RDGSPQPKAAKPRASGGNGGNGNNGGRPAAGGNGARAANGNAAHPNRNRSSRSGQRGH
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggccatccctgccgtcctcggcggcggcgac
ctgctcgccggcgcgcaaaccggcacgggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcatcgcggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aaatacctgaagctgcgctcgacggtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagacgatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctggcgaagctgccgccg
cgccgccagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgattcgccggcgctgatcgaggtcgcacgccgcaacacgactgccgagagc
gtcgcgcagaagatccatccggtcgatcgcgatcgcaagcgcgagttgctcacgcacctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagctgaccaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtcggagttcaagagcagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgaaaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcaggcttcgagcccgat
ccgaatgcgaagccggaaccgatccagcagcgtcgcggccagcagccgcgcggcggtggt
ggcggcggcggcggcaatcgcgcgccgcgcgccggcggctcagcgcagccggccgcgaag
cgcgacggcagcccgcagccgaaggcagcgaagccgcgtgcatccggcggcaatggcggc
aacggcaacaatggcggccggcccgcggccggcggcaacggcgcacgcgcggcgaacggc
aacgccgcgcacccgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcactga
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