Burkholderia cenocepacia DDS 22E-1: DM39_4973
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Entry
DM39_4973 CDS
T03308
Name
(GenBank) beta-eliminating lyase family protein
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen00260
Glycine, serine and threonine metabolism
bcen00460
Cyanoamino acid metabolism
bcen00630
Glyoxylate and dicarboxylate metabolism
bcen00670
One carbon pool by folate
bcen00680
Methane metabolism
bcen01100
Metabolic pathways
bcen01110
Biosynthesis of secondary metabolites
bcen01120
Microbial metabolism in diverse environments
bcen01200
Carbon metabolism
bcen01230
Biosynthesis of amino acids
bcen01240
Biosynthesis of cofactors
Module
bcen_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DM39_4973
09102 Energy metabolism
00680 Methane metabolism
DM39_4973
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DM39_4973
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
DM39_4973
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
DM39_4973
Enzymes [BR:
bcen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
DM39_4973
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AIO36042
UniProt:
A0A088UHL9
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All DBs
Position
2:1786101..1787348
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AA seq
415 aa
AA seq
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MFNRATSTVENVDPEVFAAIQQENRRQEDHIELIASENYTSPAVMAAQGSQLTNKYAEGY
PGKRYYGGCEYVDVVEQLAIDRVKQLFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGM
SLAHGGHLTHGSPVNMSGKWFNVVSYGLNENEDIDYDAAEKLANEHKPKLIVAGASAFAL
KIDFERLAKIAKSVGAYLMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVI
LMKAEYEKPINSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFKAYQQKVVENARVLAETL
VKRGLRIVSGRTESHVMLVDLRAKNITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGI
RLGSPAMTTRGFGPAEAEQVGNLIADVLDNPEDAATIERVRAQVAELTQRFPVYR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcgcgccaccagcaccgtcgaaaacgtggaccccgaagttttcgccgcgatc
cagcaggaaaaccgccgccaggaagatcacatcgagctgatcgcgtcggaaaactacacg
agcccggccgtgatggccgcccagggctcgcaactcacgaacaagtacgcggaaggctat
ccgggcaagcgctactacggcggctgcgagtacgtcgacgtcgtcgagcagctcgcgatc
gaccgcgtgaagcagctgttcggcgcggaagccgcgaacgtgcagccgaactccggctcg
caggcgaaccagggcgtgttcttcgcgatgctcaagccgggcgacacgatcatgggcatg
agcctcgcgcacggcggtcacctgacgcacggctcgccggtgaacatgtcgggcaagtgg
ttcaacgtcgtcagctacgggctgaacgagaacgaggacatcgactacgacgcagccgag
aagctggccaacgagcacaagccgaagctgatcgtcgcgggcgcatcggcgttcgcgctg
aagatcgatttcgagcgtctggcgaagatcgcgaagtcggtcggcgcgtacctgatggtc
gacatggcgcactacgcgggcctgatcgccgcgggcgtgtatccgaacccggtgccgcac
gccgacttcgtgacgacgacgacgcacaagagcctgcgcggcccgcgcggcggcgtgatc
ctgatgaaggccgagtacgagaagccgatcaactcggcgatcttcccgggcatccagggc
ggcccgctgatgcatgtgatcgcggcgaaggcggtggcgttcaaggaagcgctgtcgccg
gagttcaaggcctatcagcagaaggtggtcgagaacgcgcgcgtgctggccgagacgctg
gtcaagcgcggcctgcggatcgtgtcggggcgcaccgaaagccacgtgatgctggtggac
ctgcgcgcgaagaacatcaccggcaaggcagcggaagcggcactgggcgcggctcacatc
acggtgaacaagaacgcgatcccgaacgatccggaaaagccgttcgtgacgagcgggatc
cgtctgggttcgccggcgatgacgacgcgcggcttcggcccggcggaagccgagcaggtg
ggcaacctgatcgccgacgtgctcgacaatccggaggacgccgcgacgatcgagcgcgtg
cgtgcgcaggtcgccgagctgacccagcgtttcccggtctatcgctga
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