Burkholderia cenocepacia DDS 22E-1: DM39_839
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Entry
DM39_839 CDS
T03308
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family domain protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bcen
Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03030
DNA replication
bcen03430
Mismatch repair
bcen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM39_839
03430 Mismatch repair
DM39_839
03440 Homologous recombination
DM39_839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcen03032
]
DM39_839
03400 DNA repair and recombination proteins [BR:
bcen03400
]
DM39_839
Enzymes [BR:
bcen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM39_839
DNA replication proteins [BR:
bcen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM39_839
DNA repair and recombination proteins [BR:
bcen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM39_839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AIO32676
UniProt:
A0AAN0VMC8
LinkDB
All DBs
Position
1:903049..904173
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AA seq
374 aa
AA seq
DB search
MSDSRPSDPACEQPLVFVDLETTGGSSVEHRITEIGVVEIGPLGVSTWTSLVNPGQSIPP
FIQQLTGISDAMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP
DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHLHEIVPLER
LRDQIARTTRHFRLGGDLTEAWLDTAPAGCGAYALFGEADAPLYVGRSVRVRQRLRALLT
GERRSAKEMRLAQQVRRIEWRETGNELGAMLAEAQWIARLSPSFNRRPADAGRAGAAPWP
FDGAVAFEAHGERRLFHVIDGWRYLGVAESLDAAAQLAADGIDGAFEPFTHRLLQTHLTR
GLQLIPLAALTPAG
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattcccgcccgtccgatcccgcctgcgagcagccgctcgttttcgtcgacctt
gaaaccaccggcggctcgtccgtcgagcatcgcatcaccgaaatcggtgtcgtcgaaatc
ggcccgctcggcgtgtcgacctggacttcgctcgtcaatcccgggcagtcgattccgccc
ttcatccagcaactgacgggcatttcggatgcgatggtgcgcgacgcgccgtcgttcgcg
tcgctcgcgccggcgctgttcgagcggctcgacggcaagctgttcgtcgcgcacaacgcg
agcttcgatcgcggcttcctgcgcgccgagttcgagcgggccggccttgcgttcaatccc
gacgtgttgtgtacggtgcggctgtcgcgtgcgctgtttccgcgcgagtcgcggcacggg
ctcgatgcgctgatcgcgcggcacggcctcgtgccggcggcgcgccaccgcgcgctcgcg
gacgccgatctgctgtggcagttctggcgccacttgcacgagatcgtgccgctcgaacgg
ctgcgcgaccagatcgcccgcacgacgcgtcatttccgcctcgggggcgacctgacggag
gcgtggctcgacacggcgccggccggctgcggcgcgtacgcgctgttcggcgaagccgac
gcgccgctttacgtcggccgcagcgtgcgcgtgcggcagcggctgcgcgcgctgctgacg
ggcgagcggcgttcggcgaaggaaatgcggctcgcgcagcaggtgcggcgcatcgaatgg
cgggaaaccggcaatgaactgggcgcgatgctcgccgaggcgcagtggatcgcccgcctg
agcccgtcgttcaaccgtcgtcccgccgatgcgggtcgcgccggcgccgcaccctggccg
ttcgacggcgcggtcgcattcgaggcgcacggcgagcgccggctgttccacgtgatcgac
ggctggcgctacctcggcgtggcggaatcgctcgatgccgccgcgcaactcgcggccgac
ggcatcgacggcgcattcgaaccgtttacccaccgcctgctgcagacccatctcacgcgc
ggtctgcaactgattccgctggcggcactgacgccggccgggtaa
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