Burkholderia cenocepacia H111: I35_2117
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Entry
I35_2117 CDS
T03804
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo03410
Base excision repair
bceo03430
Mismatch repair
bceo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I35_2117
03430 Mismatch repair
I35_2117
03440 Homologous recombination
I35_2117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bceo03400
]
I35_2117
DNA repair and recombination proteins [BR:
bceo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
I35_2117
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
I35_2117
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I35_2117
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
HTH_3
Motif
Other DBs
NCBI-ProteinID:
CDN60640
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All DBs
Position
1:2293718..2295415
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AA seq
565 aa
AA seq
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MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPVDIETALARLVPPTELKGCADA
AVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
VELAAARQPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPG
CAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSDMSL
GIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLADVDPADACTITLFNPAW
HQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKREPDLI
VAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKEKHLKLQLARGRQRFNAIWFNHTEPLPASAL
VAYRLVADTWNGVTRVQLIVEHAAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccggatcgttacccgccccgtcgcgcccgccgacgccgaagcgcttgcgcgccac
ggtctgcaccccgtcctcgcgcgcctgtacgcgtcgcgcggcgtgcagtcgcccgtcgac
atcgagaccgcgctcgcgcgcctcgttccgcccaccgagctgaaaggctgcgccgatgcg
gcggtgctgctcgccgacgcgatcgccgacaagcggcgcctgctggtcgtcgccgactac
gactgcgacggcgcgaccgcctgcgcggtcgcggtgcgcggcctgcggatgttcggcgcg
cagatcgactacctggtgccgaaccgcttcgaatacggctacggcctcacgcccgagatc
gtcgaactcgcggccgcgcgccaacccgacctgctgatcaccgtcgacaacgggatcgcg
agcgtcgccggcgtcgaagccgcgaacgcgcgcggcatcgacgtgctcgtgaccgaccac
cacctgccgggcgacgcgctgcccgccgcgcgcgcgatcgtcaacccgaatcagcccggc
tgcgcgttcccgagcaagcacctcgccggcgtcggcgtgatgttctacgtgctgctcgcg
ctgcgcgccgagctgcgccgccgcggcgcgttcgcgagcaaggaagccgagccgcgcctc
gacggcctgctcgacctcgtcgcgctcggcaccgtcgccgacgtcgtgcggctcgacggc
aacaaccgcgtgctggtcgcgcaggggctgcagcgcatccgcaacggccgcatgcagccg
ggcatcgccgcgctgttccgcgccgccgggcgcgaagcgcgcaccgcgtcgggcttcgac
ctcggcttcggcctcggcccgcgcctgaacgccgccggtcggctgtccgacatgtcgctc
ggcatcgaatgcctgatcaccgacgacatcggccgcgcgtgggatctcgcgcaacagctc
gacgtgatgaaccgcgagcgccgcgaaatcgaggccggcatgcagcagcaggcgctcgcc
gatctcgccgacgtcgatccggccgacgcatgcacgatcacgctgttcaatcccgcgtgg
caccagggcgtgatcggcatcgtcgccggccggctcaaggagaaattccaccgcccgtcg
ttcacgttcgcgcacgccgacgacgaaggccggcgggtcaaggggtcgggacggtcgatc
gccggcttccacctgcgcgacgcgctcgacctcgtgtcgaaacgcgaaccggacctgatc
gtcgcgttcggcggccacgcgatggcggccggcctcacgctcgacaccgacaacgtgccg
cgcttcgcggccgcgttcgaggccgtcgcgcgcgaatggctgtccgacgacgcgctcgcc
cgcgtgatcgagaccgacggcgaactcgaggacgcgtacttcacgccgcagttcgtcggc
ctgctcgacgaagccgtgtgggggcaagggtttccggccccgcttttctcgggcgaattc
gacgtcgtgtcgcagtcgctcgtgaaggaaaagcacctgaagctgcagctggcgcgcggc
cgtcagcgcttcaacgcgatctggttcaaccacaccgagccgctgccggcgagcgcgctg
gtcgcgtaccggctcgtcgccgatacgtggaacggcgtcacgcgcgtgcagctgatcgtc
gaacacgcggccggctga
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