Burkholderia cenocepacia H111: I35_2858
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Entry
I35_2858 CDS
T03804
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo02020
Two-component system
bceo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I35_2858 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I35_2858 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bceo03021
]
I35_2858 (rpoN)
Transcription machinery [BR:
bceo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I35_2858 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
CDN61381
LinkDB
All DBs
Position
1:3089698..3091203
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AA seq
501 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRV
AADGSLIAQTPPAQNTEPAATNGSSPSSDRAERDEPAGADEYNGYGSGDGNDGPQWNLDE
YGRSSGASDDDDLPPLQVQEAATSLRDHLAAQLRVTQAGPRDRALVMFLIESLDDDGYLT
ATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPD
IIVKKAGQGWLAELNPEVVPRLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQ
RFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPFG
TLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagccttcaactccgcctgtcgcaacatcttgcgctgacgcctcagctgcag
cagtcgatccggctcctgcagttgtcgacgctcgaactgcagcaggaagtcgcgatggcc
gtcgcgcagaacccgctgctcgagaacgacgacgaatggatcgcgagcccgctgcgcgtc
gcggcggacggatcgctgatcgcgcagacgccgcccgcacagaacaccgagcccgccgcg
accaacggcagcagcccgtccagcgatcgcgcggagcgcgacgagccggccggcgccgac
gaatacaacggctacgggtccggcgacggcaacgacggcccgcagtggaacctcgacgaa
tacggccgctcgagcggcgcgtccgacgacgacgacctgccgccgctgcaggtgcaggaa
gccgcgacgtcgctgcgcgaccacctcgccgcgcagttgcgcgtcacgcaggccggcccg
cgcgatcgcgcgctcgtgatgttcctgatcgaatcgctcgacgacgacggctacctgacc
gccacgctcgacgaagtgctcgccgacctgccgcccgaactggaaatcgactgcgacgaa
ctgaacgcggcgctcgcgctgctgcacagcttcgacccggccggcgtcggcgcgcgctcg
gcgtccgaatgcctgaagctgcagctgctgcgtctcgatccgtccccgacgcgcacgctc
gcgctcgagatcgtgtcgcagcacctcgaactgctcgccgcacgcgacttcacacggttg
cgcaagcacctgaaggcgagcgacgacgcgctgcgcgacgcgcacgcactgatccgctcg
ctggagccgttccccggcgccgcatacggcaaggccgaggccgactacgtcgtgcccgac
atcatcgtgaagaaggccggccagggctggctcgcggagctcaatccggaagtcgtgccg
cgcctgcggatcaacaacctgtacgcgaacatcctgcgcaacagccgcggcgatccgtcg
gccggatcgctgaaacagcagctccaggaagcgcgctggctgatcaagaatatccagcag
cgattcgacacgatcctgcgtgtcgcgcaggctattgtcgagcgtcagaagaatttcttt
gcgcacggtgaaattgccatgcgccccttggttttgcgggaaatagctgatacgctgggc
ctacacgagtcgactgtcagccgtgtgacaaccgggaagtacatgctgaccccgttcggg
acgcttgaatttaagtacttcttcggatctcacgtctcgaccgacaccggtggcgccgcc
tcgtcgaccgccatccgagccctcatcaagcaactgataggagctgaagacccaaaatcg
ccactttcggacagccgcattgccgagctgctggcagaacagggtttcgtggtcgcgcgc
cgcacggttgcgaaatatcgcgaagccctcaagatcccggcagtgaatctgcgcaagtct
ctttaa
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