Burkholderia cenocepacia H111: I35_4625
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Entry
I35_4625 CDS
T03804
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bceo
Burkholderia cenocepacia H111
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bceo03016
]
I35_4625
Enzymes [BR:
bceo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I35_4625
Transfer RNA biogenesis [BR:
bceo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I35_4625
Prokaryotic type
tRNA splicing ligases
I35_4625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CDN62461
LinkDB
All DBs
Position
2:complement(705590..706828)
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AA seq
412 aa
AA seq
DB search
MKQMTDMDMDYQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQMPFIFGHVAVMPDVHL
GKGSTIGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTAADLPDSLGGLRSAIERAVPHGR
APGRRDPGAWGDRTPAAVTDAWKSLQPGFQRIVDKYPKLAKTNHYAHLGTLGTGNHFIEV
CIDEADRVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDY
VEAVGWAQDYARRNRQAMMDAVIGAARGVIGTPFSVDAHAVNCHHNYVQRERHFGEDVLV
TRKGAVSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTADD
QAKATQGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaaatgaccgacatggacatggattatcaggtgatggaactggcgaacggcaag
ccggtgaaaatgtggacgcaaggcgtcgccgtcgaggacgaagcgcgcgcgcaactgcgc
aacaccgcgcagatgccgttcatcttcggccacgtcgcggtgatgccggacgtgcacctc
ggcaagggctcgacgatcggcagcgtgattccgacgaagggcgcgatcatcccggccgcg
gtcggcgtcgacatcggctgcggaatgatggccgcgcgcacgacgctgacggcggccgac
ctgcccgattcgcttggcgggctgcgcagcgcgatcgaacgcgcggtgccgcacggccgc
gcgccgggccggcgcgacccgggcgcatggggcgatcgcacgccggccgccgtgaccgac
gcgtggaaatcgctgcagccgggctttcagcgcatcgtcgacaagtatccgaagctggca
aagacgaaccactacgcgcatctcggcacgctcggcaccggcaaccacttcatcgaagtg
tgcatcgacgaggcggaccgcgtgtggttcatgctgcacagcggctcgcgcggcgtcggc
aatgcgatcggcagcctgttcatcgaactcgcgcaggccgacatgcgacaacacatcgcg
aacctgcccgaccgtaatctcgcgtacttcaccgaaggcagccggcacttcgacgattac
gtcgaggcggtcggctgggcgcaggactacgcgcggcgcaaccggcaggcgatgatggac
gcggtgatcggcgcggcgcgcggcgtgatcggcacaccgttctcggtcgacgcgcatgcg
gtgaactgccaccacaactacgtgcagcgcgaacgccacttcggcgaagacgtgctcgtc
acgcgcaagggcgcggtgtccgcgcagaaggggcaactcgggatcattccgggttcgatg
ggcgcgaagagcttcatcgtgcgcgggctcggcaacccggaaagcttctgctcgtgcagc
cacggcgcgggccggacgatgagccgtaccgaagccaagcgccgcttcaccgccgacgat
caggcgaaggcgacgcagggcgtcgaatgccggaaggacgcgggcgtcgtcgacgaaatc
ccgatggcctacaaggacatcgacgcggtgatggcggcccagcgcagcctcgtcgaagtg
gtgcatacgctgcgccaggtggtgtgcgtgaagggatag
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