Burkholderia cepacia ATCC 25416: APZ15_05305
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Entry
APZ15_05305 CDS
T04772
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_05305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_05305
03400 DNA repair and recombination proteins [BR:
bcep03400
]
APZ15_05305
Enzymes [BR:
bcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APZ15_05305
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APZ15_05305
DNA repair and recombination proteins [BR:
bcep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APZ15_05305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALK19526
LinkDB
All DBs
Position
1:1178103..1180019
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AA seq
638 aa
AA seq
DB search
MRPASRERVVKIAVIVQPSPSSFMSRALEILDEVFGYPAFRGQQGEIVEHVAGGGDCLVL
MPTGGGKSLCYQIPALLRREAGQGAGIVVSPLIALMQDQVAALSEVGVRAAYLNSTLSGA
EAAATERALREGEIDLLYVAPERLMTGRFLDLLERAKIGLFAIDEAHCVSQWGHDFRPEY
IQLSVLHERFPSVPRIALTATADAITRDEIIHRLALDDARVFVSSFDRPNIRYRIVEKDN
ARSQLLDFIRAEHTNADGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGMEFEVRQ
KHQEMFQREEGIVMCATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANA
WMAYGLGDVVQQRKMIDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGEESKP
CGNCDTCLEPPASWDATREAQMALSCVFRAQRASGFNFGSSHLIEILRGGRTEKVLQRGH
DQLTTFGIGASLSEPEWRAIFRQLVAYGYLAVDHGGFGALVLTEAAKPVLKNEEKVTLRR
YVKPQRTRQSSGRSGTRVDPTAGMGTRERARWDALRAWRAETAKTDGVPAYVIFHDATLA
EIARNAPETIDDLRHIPGMGVRKLERFGDEIIDVVESA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
attcgccccgcgtcccgcgagcgggttgttaaaattgcggtcatcgtccagccgtccccg
tcctctttcatgtcccgcgccctcgaaatcctcgacgaagtatttggttatcccgctttt
cgcggccagcagggcgaaatcgtcgaacacgtcgccggcggcggcgattgtctcgtgctg
atgccgaccggtggcggcaagtcgctgtgctaccagattccggcgctgctgcgtcgcgag
gccgggcagggtgccggtatcgtcgtgtcgccgctgatcgcgctgatgcaggaccaggtc
gccgcactgagcgaagtgggcgtgcgcgcggcgtacctgaactcgacactgtcgggcgcc
gaggccgcggcgaccgagcgggcgctgcgcgaaggcgaaatcgacctgctgtatgtcgcg
cccgaacggctgatgacggggcgcttcctcgacctgctcgagcgcgcgaagatcggcctg
ttcgcgatcgacgaagcgcactgcgtgtcgcaatgggggcacgatttccgcccggaatac
atccagctgtcggtgctgcacgagcgatttccgtcggtgccgcgcatcgcattgaccgcg
acggccgatgcgatcacgcgcgacgagatcatccaccgtctcgcgctcgacgacgcacgc
gtgttcgtgtcgagcttcgaccgcccgaacatccgctaccggatcgtcgaaaaggacaac
gcgcgatcgcagctgctcgatttcatccgcgccgaacacacgaatgccgacggcacgacg
gatgcgggtgtcgtctattgcctgtcgcgtcgcaaggtcgaggaaacggccgaatggctg
aaggcgcaaggcgtgcgtgcgctgccgtatcacgcggggatggagttcgaggtgcggcag
aagcaccaggaaatgttccagcgcgaggaaggcatcgtgatgtgcgcgacgatcgcgttc
ggcatgggcatcgacaagccggacgtgcgcttcgtcgcgcacctggatctgccgaagagc
gtcgaaggctactaccaggaaacgggccgtgccggccgcgacgggatgcccgcgaatgcg
tggatggcgtacgggctcggcgacgtcgtccagcagcgcaagatgatcgacgaatcggat
gccgacgacgcacacaagcgcgtccagacgtcgaagctcgacgcgctgctcgggctgtgc
gagacgatctcgtgccgccgcgtgcggctgctgaactacttcggcgaggagagcaagccg
tgcggcaactgcgatacgtgcctcgagccgcccgcttcgtgggacgcgacgcgtgaggcg
cagatggcgctgtcgtgcgtgttccgcgcgcagcgcgcgagcggcttcaatttcggctcg
agccacctgatcgagatcctgcgcggcgggcgcaccgagaaggtgttgcagcggggccac
gaccagctgacgacgttcgggatcggcgcgtcgctgtcggagcccgagtggcgcgcgata
tttcggcagctcgtcgcgtacggctacctggccgtcgatcacggcggcttcggtgcactc
gtgctgaccgaggccgcgaagccggtgttgaagaacgaggagaaggtcacgctgcgccgc
tacgtgaagccgcagcgcacgcgccagtcgtcgggccgcagcggcacgcgcgtcgacccg
acggccggcatgggcacgcgcgagcgcgcaaggtgggatgcgctgcgcgcgtggcgcgcg
gaaacggcgaagacggacggcgtgccggcctacgtgatcttccacgacgcgacgctcgcc
gagatcgcacgcaacgcgccggagacgatcgacgacctgcgccatatccccggcatgggg
gtgcgcaagctggagcgcttcggcgacgagatcatcgacgtcgtcgagtctgcctga
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