Burkholderia cepacia ATCC 25416: APZ15_09260
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Entry
APZ15_09260 CDS
T04772
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_09260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_09260
03009 Ribosome biogenesis [BR:
bcep03009
]
APZ15_09260
Enzymes [BR:
bcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
APZ15_09260
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APZ15_09260
Ribosome biogenesis [BR:
bcep03009
]
Prokaryotic type
rRNA processing factors
APZ15_09260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALK17965
LinkDB
All DBs
Position
1:complement(2021968..2025096)
Genome browser
AA seq
1042 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPVAPASGGFIGWLKGLFGVAPAPAPAPVAPAPAKEQAARPAR
GERAEKSEQRGERGGDRNRNRRGGAQQAQGGRDQAAAGRGQQQRQEREGKEVREAREPRE
NREPREGREPREGREIREGREGREGREGRGPREGREPRESREPRENREPRERAEQPEGVE
AAGRGERQERRERGERRKPTQHAATLETVNRGETHPEPDADKAVAEALPGAELAADAEAG
ARDGEERRRRRRGRRGGRREREEDGAVVDHAEQGADGEAAVQAVTPEAPAAAEPAHTAAP
AVVVAAAAASAVVAEAAVEHHAEPVAPAAVEPQPAPVHVEAAPVEPAVVAHAAEPAPVAP
AVETEAGPAPVAVSPTDAFEVPAAPAAVEAPQSAPVEQAAPAVAIEAAPAAVEPAPVEAA
PVEAVAAPAPVPAQPAAAPASASLDVVLEQAGLVWVNTDADKFAAAQEAASRLPRPARVP
RERKALPPVDTAPMQQVETTHH
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaattac
ggcgaagaccgccacgggttcctgccgttcaaggaagtcgcccgccagtatttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgcgctgcgcgaaggccaggagctgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgtcaggaactgcgtgaaacgatggcgcaactgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aacgccggccagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgatacgaacgagatccacgatcag
gcccgcgcattcatggatatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgagaccgcgtactcg
cgtacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctccgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcatgaccgcgcgcgcgtccagatgggcaagatctcc
cgtttcggcctgatggaactgtcgcgccagcgcctgcgtccggccctgtcggaaggcagc
cacgtgacctgcccgcgttgtaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgccacgacgacgcacgtctcgacgatccgcgcgca
tcctggaagatggccgaggaagcggcccgcgaactcgagtcggaaaccggctacagcaag
cgcgcggcggaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcgccgagcccggcaccgcagcgtccggtcgaacccgttgccgcgcccgcgcccgtc
gcgccggcaagcggcggtttcatcggctggctgaagggcctgttcggtgtggcgccggct
ccggcgcccgcaccggttgccccggcaccggcgaaggagcaggcagcccgcccggctcgc
ggcgaacgcgccgagaagtccgagcaacgcggcgaacgcggcggcgatcgcaaccgcaac
cgtcgcggcggcgcccagcaggcacaaggcggacgcgaccaggcagcggcaggccgcggc
cagcagcaacgccaggaacgcgaaggcaaggaagtgcgtgaagcacgcgaaccgcgcgag
aaccgcgaaccgcgcgagggccgtgagccgcgtgaaggtcgcgagatccgcgaaggccgt
gagggtcgcgaaggtcgcgagggccgtggcccgcgcgaaggccgcgagccgcgtgaaagc
cgcgaaccgcgcgagaaccgcgaaccgcgcgagcgtgccgagcagccggaaggcgtcgaa
gccgccggccgtggcgagcgccaggaacgtcgcgagcgcggcgagcgccgcaagccgacc
cagcatgcggctacgctcgaaacggtcaaccgtggcgaaacgcatccggaaccggacgcc
gacaaggccgtcgccgaggccctgcccggcgccgagctggcagccgacgcggaagccggc
gcgcgtgatggcgaggaacgtcgccgtcgccggcgcggccgccgcggcggtcgccgcgag
cgcgaggaagacggcgcagtcgtcgaccacgccgagcaaggcgcagatggcgaagccgcc
gtgcaagccgtgacgccggaagcaccggctgctgccgaaccggcccacacggccgcaccg
gcagtcgtcgtggccgcggctgcggcaagcgccgtcgtcgccgaagcagcggtcgagcac
cacgccgaaccggttgcgccggccgctgtcgagccgcagccggcaccggtacacgtcgaa
gcggctccggtcgaaccggcggttgttgcccacgcggcagaaccggctccggtcgcaccg
gccgtcgaaacggaagccggtccggctccggtcgcggtttcgccgacggacgcgttcgaa
gtgccggcagcgcctgccgcggtcgaagcaccgcagtccgcgcccgtcgagcaagccgcg
ccggccgtggcgatcgaagccgctccggcggctgtcgagccggcaccggtcgaagctgcg
ccggtcgaggccgtcgcagcaccggcaccggttcccgcacaaccggcagccgcgcccgct
tcggcgagcctggatgtcgtgctggagcaggccggtctcgtctgggtgaacacggacgcc
gacaagttcgccgccgcgcaggaagccgcgtcgcgactcccgcgtccggctcgtgtgccg
cgcgaacgcaaggcactgccgccggtcgatacggccccgatgcagcaggtcgaaacgacg
catcactga
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integrated database retrieval system
