Burkholderia cepacia ATCC 25416: APZ15_09775
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Entry
APZ15_09775 CDS
T04772
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
APZ15_09775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcep03400
]
APZ15_09775
Enzymes [BR:
bcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
APZ15_09775
DNA repair and recombination proteins [BR:
bcep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
APZ15_09775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
TMP_N
DUF374
Motif
Other DBs
NCBI-ProteinID:
ALK18063
LinkDB
All DBs
Position
1:2140895..2144605
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AA seq
1236 aa
AA seq
DB search
MSAVSQPQQALELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVT
FTKAATAELHERIRGRLAQLAHALDTGDDGGDRFIERLLETTLGEGGELDPETAAKRIRR
ALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDASLRFELAADFWRTRVEPAA
ARWPGFATWLVESGAGPAALDAQLARRLKKPLAALRWDGVTEPDESAEAAAAECFAEAGR
IWAAEREAIDALLRAAQPALNQRSHKPEAVADALAAWAAHFAQGDATAALPKAALKLTRT
ALVKATKKGGATPEHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAERKRT
RRIVSFDDLLANLYHALHAHPWLAETLRARYPAALIDEFQDTDPLQFAIFDRIFAPGGPL
FLVGDPKQAIYSFRAADLHTYLAARARASACYTLAVNQRSTPAIVDACNRFFMSNPRAFV
LDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEI
ARLMRGARVGRVRLGESPLSPGDIAVLVQTHRQGSLVKRVLATWGIGSVELAQASVFSTG
DAEQLERVLAAIDAPGDLRRLRAALAADWFGLDAGALWRMEQGDGDASHEASAADSADAM
SWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARAS
AQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGG
LREPPASALPDAREYHDDAGDAVLHYGCDDEAAAHAAQQALREQAAERARLVYVALTRAV
YRCYVVAGPYLSSRSTREARRSVLNWLVAGAGQSFDAWLDEPPDEAALDTAWHALAGGPV
SVAPLPAPARPERLAAGHDASQTLAARHATRVLRDAWRMASFSSLTASMAREEAGVAAVP
DDELRPDHDALAAVAPDAEWLLADTVAPEPPDDDILVFPRGAAAGECLHRLFELSRFTEP
ESWPKAALGALHDRPVEAGPELATRLPAMMVQLVDDVVHTELVPGMRLVDLDPAKRLDEM
GFLFPAPSLDLMALRRLLVAHGYPDVALEAGMLAGFIKGFIDMIVEHDGRFWIVDWKSNH
LGTTPDAYGPRALDVAMADHAYHLQALLYTVALHRYLRGRLPDYDYDTHVAGYLYLFVRG
VRPGWRSGGEPAGVHARRPARALVDALDRVMEGGRA
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgtgtcgcagccgcagcaggcgctcgaactcgacgtgttcgcgtgtccgctc
gatggcgtcaaccagatcgaggcatcggccggcaccggcaagacctggaacatctgcgcg
ctctatgtgcgcctgctgctggaaaaggatctcggcgcggacgaaatcctcgtcgtgacc
ttcacgaaagcggcgaccgcggagctgcacgagcggattcgcggccggctcgcgcagctt
gcgcatgcgctcgacacgggggacgacggcggcgatcggttcatcgagcgcctgctcgag
acgacgctcggcgaaggtggcgagctcgatcccgaaacggccgcgaaacggatccggcgt
gcgctgcgcgcgttcgaccaggcggccatccatacgatccacgcgttctgccagcgcgcg
ctgcaggaagcgccgttcgcggccgcgatgccgttcgcgttcgacatggaggccgacgat
gcgtcgctgcgcttcgaactcgcggcggatttctggcgcacgcgcgtcgaaccggcggcc
gcacgctggccgggtttcgcgacctggctcgtcgaatcgggcgccgggccggccgcgctc
gacgcgcagctcgcgcgccggctgaagaagccgctcgccgcgctgcgctgggacggcgtg
accgagcccgacgaatcggccgaggccgccgcggccgaatgcttcgcggaggccgggcgg
atatgggcggccgagcgcgaagcgatcgatgcgttgctgcgcgccgcgcagcccgcgctc
aaccagcgttcgcacaaacccgaagcagttgccgatgcgctcgccgcatgggccgcgcat
ttcgcgcagggcgacgcgacggctgcgctgccgaaggccgcgctgaagctcacgcgcacc
gcgctcgtgaaggcgacgaaaaaaggcggcgcgacgcccgaacacgcgttcttcgacgtg
gcggacgcgctcgaggcggccgtggcggcggctgaagccgcgcaacgcgcgcgctggctc
gcgctgatcgccgaatggctcgacatggcgccgggcgagctggccgagcgcaagcgcacg
cggcgcatcgtgtcgttcgacgatctgctggcgaacctgtaccacgcgctgcatgcgcat
ccgtggctcgccgagacgctgcgcgcgcgctatccggccgcgctgatcgacgagttccag
gataccgacccgctgcagttcgcgatcttcgaccggatcttcgcgccgggcggcccgcta
ttcctcgtcggcgatccgaagcaggcgatctacagcttccgcgcggccgatctgcatacc
tatctggcggcgcgcgcgcgggcgagcgcgtgctacacgctcgcggtcaaccagcgctcg
acgcccgcgatcgtcgatgcgtgcaaccgcttcttcatgtcgaatccgcgcgcgttcgtg
ctggacgggctcgactattacgcggtgcgtgccggcacgcgcgtgcgcgcgccgttcgtc
gacgaaaccgatccgggcccggcaggcgacttccgggtgtgggcgttgcctggcggtgaa
ggcacgttgctcaagcgtgatgcgcaggcacaggccgcgcaggcctgtgccgccgagatt
gcccggctgatgcggggcgcgcgcgtagggcgcgtgcggctcggcgagtcgccgctgtcg
ccgggcgatatcgcagtgctcgtgcagacgcaccggcagggcagtctcgtgaagcgcgtg
ctggccacgtggggcatcggcagcgtggaactggcgcaggcctcggtgttctcgaccggc
gacgcggagcagcttgaacgcgtgctggcggcgatcgatgcgccgggcgacctgcgacgt
ctgcgcgcggcgctcgcagccgactggttcggcctcgatgccggcgcactgtggcggatg
gagcagggcgacggtgatgcatcacacgaagcgtccgcggctgacagcgccgacgcgatg
agctgggtcgagcgcttctcgcggtaccggctgctgtggcgcgaacgcggtttcgcggtg
atgtggcgcacgttcacgcgcgaattgcggatcgccgagcggctgatggccggcgcggac
ggcgagcgtcgcgtgaccgacatcaaccatctggccgaactgacgcaggcacgcgcgtcc
gcgcagccgggcatcgcgccgacgctgcgctggcttgccgcgcaacggctcgacggcggc
ggcgaggaagcgcagttgcggctcgaatccgatcgcaacctcgtgcagatcgtcaccgtg
cacaagtcgaaaggcctcgaatacgcgatcgtgttctgtccgttcctgaacgacggcggg
ttgcgcgagccgcccgcgtccgcgttgcccgatgcgcgcgaataccacgacgatgcgggc
gacgcggtgctgcattacgggtgcgacgacgaggcggccgcgcatgcggcgcagcaagcg
ctacgcgagcaggccgcggagcgcgcgcggctcgtctacgtggcgctcacgcgtgcggtc
tatcgctgctacgtcgtcgccgggccgtacctgtcgtcgcgctcgacgcgcgaggcgcga
cgcagcgtgctcaactggctcgtcgccggcgccggccagtcgttcgatgcatggctcgac
gagccgcccgacgaagccgcgctcgatacggcgtggcacgcgctcgcgggcggccccgta
agcgtcgcgccgctgccggcgcctgcgcgccccgagcgtctggcggccgggcacgacgcg
tcgcagacgctcgcggcgcgccatgcgacgcgcgtgctgcgcgatgcctggcggatggcc
agcttcagttcgctgaccgcgtcgatggcgcgcgaggaggcgggcgtcgcggccgtgccg
gatgacgaactgcggcccgaccacgatgcgctcgccgcggtcgcgccggatgccgagtgg
ctgttggccgatacggttgcgcccgaaccgccggacgacgacatcctcgtgttcccgcgc
ggcgcggcggccggcgagtgcctgcaccgcctgttcgagctcagccggttcaccgagccc
gagtcgtggccgaaggccgcgctcggtgcgctgcacgaccggccggtcgaggccgggccc
gaactcgcgacacgtctgccggcgatgatggtgcaactggtcgatgacgtcgtgcacacc
gagctcgtgccgggcatgcggctcgtcgatctcgatcccgcgaagcggctcgacgaaatg
gggttcctgttcccggcgccgtcgctcgacctgatggcgctacgccgcctgctggtcgcg
cacggctacccggacgttgcactggaggcgggcatgctcgccggtttcatcaagggtttc
atcgacatgatcgtcgaacacgacggccgcttctggatcgtcgactggaagtcgaaccat
ctcggcacgacgccggacgcctatggcccgcgcgcgctcgacgtcgcgatggccgaccac
gcatatcacctgcaggcgctgctctatacggtcgcgctgcatcgctacctgcgcgggcgg
ttgcccgattacgactacgacacgcatgtcgcgggctacctgtacctgttcgtgcggggt
gtacggcccggctggcgcagcggcggcgagccggccggcgtgcatgcgcggcggcccgcg
cgcgcgcttgtcgacgcactcgaccgggtgatggaagggggccgcgcatga
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