KEGG   Burkholderia cepacia ATCC 25416: APZ15_10605
Entry
APZ15_10605       CDS       T04772                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bcep  Burkholderia cepacia ATCC 25416
Pathway
bcep02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bcep00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    APZ15_10605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bcep03021]
    APZ15_10605
Transcription machinery [BR:bcep03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     APZ15_10605
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_24 HTH_IclR HTH_28 HTH_11 HTH_7 HTH_3 GerE HTH_29 TnsD PhyR_sigma-like Xre-like-HTH HTH_31 MarR_2 HTH_20 LacI HTH_38 HTH_Tnp_ISL3 Trp_repressor HTH_Crp_2 MarR HTH_40 HVO_A0261_N HTH_17 Phage_NinH
Other DBs
NCBI-ProteinID: ALK18219
LinkDB
Position
1:2332854..2333363
AA seq 169 aa
MSADQLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEP
RAFLTTVAQRVLSNHWRREQIERAYLDALAQHPEAHAPSPEERAVVFETLLEIDRLLDGL
PLAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGTQCFFAMAA
NT seq 510 nt   +upstreamnt  +downstreamnt
atgtctgctgaccagctgtccctccatcgagaaatcgacgccctctataccggccaccac
gcgtggctgcgcggctggttgagccggaagctcggttgcgcgcaccgcgcggccgatctg
gcgcacgacaccttcatgcgcctgctcgcacgcgacgagccgatcggcgccgacgaaccg
cgcgcgttcctcaccacggtcgcgcagcgcgtgctgagtaaccactggcggcgcgagcag
atcgagcgcgcgtatctcgatgcgctcgcgcagcaccccgaagcgcatgcgccgtcgccg
gaggagcgggccgtcgtgttcgagacgctgctcgaaatcgaccggctgctcgacggcctg
ccgctcgcggcgaagcgagcgttcctgctcgcgcaactcgacgggctcacgcaggccgag
atcgcgcgcgaactcggcgtgtcgctcgcgacggtgaagcgttatctcgtgaaggccggc
acgcagtgtttcttcgcgatggcggcctga

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