Burkholderia cepacia ATCC 25416: APZ15_11490
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Entry
APZ15_11490 CDS
T04772
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep02024
Quorum sensing
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_11490
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
APZ15_11490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_11490
03036 Chromosome and associated proteins [BR:
bcep03036
]
APZ15_11490
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
APZ15_11490
Chromosome and associated proteins [BR:
bcep03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
APZ15_11490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
SelB_WH1
Motif
Other DBs
NCBI-ProteinID:
ALK18383
LinkDB
All DBs
Position
1:complement(2538090..2538674)
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AA seq
194 aa
AA seq
DB search
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGSGGPRGPRTGGRPGGREGGGHSPYGSHGGPRESRGDGGGYGSRE
PREGYGSREPREGYGSREPREGYGAPREPREPRESYGAPRDAGDASGNASPSDSRGGNGP
VIVTRRRRIVPDGQ
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcgcgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacggggtgtatcgagtcg
ttcgaccagtacctggtgatgctgcgcacccccgtgggtctgcaaggcatctacaagcgc
gcgatttccacgatccagctcgacacgggcggctcgcgcccgggcggcagcggcggcccc
cgcgggccgcgcaccggcgggcgcccgggcggccgtgaaggcggcggtcacagcccgtac
ggctcgcacggcggcccgcgtgaatcgcgcggcgacggcggcggctacggctcccgcgaa
ccgcgtgaaggctatggctcgcgcgaaccgcgcgagggttacggctcgcgtgagccgcgt
gagggctacggcgccccgcgcgaaccccgtgaaccgcgcgaaagctacggcgcaccgcgc
gatgccggcgacgcatccggcaacgcttcgccgtcggattcccgcggcggcaacggtccg
gtgatcgtgacgcgccgccggcgaatcgtgccggacggccagtaa
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