Burkholderia cepacia ATCC 25416: APZ15_11590
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Entry
APZ15_11590 CDS
T04772
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_11590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_11590
03016 Transfer RNA biogenesis [BR:
bcep03016
]
APZ15_11590
Enzymes [BR:
bcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APZ15_11590
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APZ15_11590
Transfer RNA biogenesis [BR:
bcep03016
]
Prokaryotic type
tRNA degradation factors
APZ15_11590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
ALK18397
LinkDB
All DBs
Position
1:2558768..2561257
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AA seq
829 aa
AA seq
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MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPTDLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGYRLIVAIADVSHYVQPG
SALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITGRGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGRKYVPKAPDGFELNTALSPR
ARAMQQADDETRGRSRPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPSPAPASAGGGIDRNGPRVRALPQAEEPAPRRK
KAASAPSVAVNDARAARAAAKKKGGSAGNGGGGAAAKPTAKKTRARKKY
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggctgccaacgacatcgccgaagcactgtcgatcaagcgtcaggag
cgcgaggggttcttccggcgtgtcgccgcgatggagcgcgacggccagatccgcctcgac
aagcgcggccattaccagttgacccatccgtcgaacttcgtcgccgggcgcgtgcaaggg
catcgcgacggctacgggttcgtgatccgcgacgacggccaggacgacctgttcctgccg
aacggtgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccgcccggaagggcacgttgtcgaagtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtcgcaccggaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagctgaccgatttcccgagccgccattcgcagccgctcggccgtgtcgtcgag
gtgctcggcgacatcgacgatccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcacgaattcagccagccggcgctcgacgaagccgccgcgctgcccgacaaggtg
cggccgaccgacctgcgtttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcacgcgacttcgacgatgccgtctactgcgagccggtgaaggtcggccgc
ggcgacggctaccggctgatcgtcgcgatcgccgacgtgtcgcattacgttcagcctggg
agcgcgctcgatgccgacgcgctcgagcgcagcacgtcggtctactttccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacggcctgtgctcgttgaatccgcaggtcgac
cgttgcgtgctcgcgtgcgacatggtgatcaccgggcgcggcgagatcaaggcgtaccag
ttctacccggccgtcatccattcggctgcgcgcctcacgtacaccgaagtcgcggccgtg
ctgtcgaacacgaaggggccggaggccgcgcgccgcgcggacctgctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcacggcagaagcgtggcgcgatcgac
ttcgacacgaccgagacctacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgccagcgtaacgacgcgcacaagctgatcgaggagtgcatgctggccgcaaacgtc
tgcgcggccgatttcctgaagcgcaacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgtgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggcgacaagccgcatgcgagcgactacgcggcgctgatggcgcagatccgcgac
cggcccgatgcgcagatgctgcagccgatgctgttgcgctcgatgcagcaggccgtctac
agcccggacaacatcggtcacttcggcctggcctacgaggcgtacgcgcacttcacgagc
ccgatccgccgttatccggacctgctcacgcaccgcgcgatctacgcgatcctgtccggc
aggaaatacgtgccgaaggcgccggacggcttcgagctgaacaccgcgctgtcgccacgc
gcccgtgcgatgcagcaggccgacgacgaaacgcgcggccgctcgcgcccgaatacggcg
atctgggaagaactcggcctgcactgctcggcgaacgagcgccgcgcggacgaagcatcg
cgcgacgtcgaggcctggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgcttttc
atcgaagggcttgtgcacgtcaccgaactcggctcggactacttccagtacgacgaaatc
aagaacgagctgcgcggcgaacggacgggcatccgctatcgtctgtcggatcgcgtgcgc
gtacaggtgagccgtgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgcccgtcgcccgcgccggcttcggctggcggcggtatcgac
cgtaacggcccgcgtgtccgtgctctgccgcaggcggaagaacccgcgccgcgccgcaag
aaggccgcgagcgcgccgagcgtcgcggtgaacgacgcgcgcgccgcgcgtgccgccgcg
aagaagaagggcggtagtgccggcaacggcggcggcggtgcggcggcgaagccgaccgcg
aagaagacccgcgcccgcaagaagtattga
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