Burkholderia cepacia ATCC 25416: APZ15_14100
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Entry
APZ15_14100 CDS
T04772
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_14100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcep03021
]
APZ15_14100 (rho)
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_14100 (rho)
Transcription machinery [BR:
bcep03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
APZ15_14100 (rho)
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APZ15_14100 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALK18837
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All DBs
Position
1:3057807..3059069
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AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtctctgcacgtgtccgaactgatcgaaatggccaatggc
ctcgagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgtttgccattcttaaa
aagcgcgccaagacgggagagacgatcttcggtgacggtacgctcgaagtgctgccggac
ggtttcggcttcctgcgctcaccggaaatgtcgtacctcgcgagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgaacgctacttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctctcgctcgaacgcgaaatgcgcggcgaagagaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaaaggccagcgcggcctgctcgtcgcatcgccg
aagtcgggcaagaccgtgatgctccagcacatcgcgcacgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgagcgccctgaagaagtgaccgaaatgcag
cgctcggtcgcgggcgaagtgatcgcctcgacgttcgacgaaccggccacgcgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgacgtc
gtgatcctgctcgactcgatcacgcgtctcgcacgcgcatacaacaccgtgatcccggcg
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcactgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaatatcgaggaaggcggctcgctgacgatcatcggcaccgcactg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgcctcgcggaaaagcgcgtctatccgtcgatcaacctg
aacaagtcgggcacgcgccgcgaagaaatgctgatcaagcccgagatcctccagaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaggcaatggaatttctgctc
gacaagatccgccagacgaagagcaactccgagttcttcgacctgatgcgccgcggcggc
taa
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