Burkholderia cepacia ATCC 25416: APZ15_16605
Help
Entry
APZ15_16605 CDS
T04772
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_16605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_16605
03016 Transfer RNA biogenesis [BR:
bcep03016
]
APZ15_16605
Enzymes [BR:
bcep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
APZ15_16605
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APZ15_16605
Transfer RNA biogenesis [BR:
bcep03016
]
Prokaryotic type
tRNA degradation factors
APZ15_16605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ALK19683
LinkDB
All DBs
Position
1:complement(3586448..3588595)
Genome browser
AA seq
715 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLV
VAGTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPK
NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTAAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTNSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAAAQSDTPPQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccagtggggccagcacaaggtgcgcctc
gaaaccggtgaagtcgctcgccaggcaagcggtgccgtgatcgtcgacgtcgaagacacc
gtcgtgctggcaaccgtcgtcggcgcgaagtcggcgaagccgggccaggacttcttcccg
ctgaccgtcgactacctcgagaagacctactcggccggcaagatcccgggtggcttcttc
cgtcgcgaaggccgtccgtcggagcacgagacgctgacgtcgcgcctgatcgaccgtccg
ctgcgcccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcatcggctgcgctc
gccgtgtcgggcctgccgttcaacggcccggtcggtgctgcgcgcgttgcctacatcgac
aacgcctacgtgctgaacccgacgcgtgaccagatcaaggcatcgagcctcgacctcgtc
gtcgcgggtacggagcgtgcggtgctgatggtcgaatcggaagccgaccagctgtcggaa
gacgtgatgctgggcgccgtggtgttcggccacgagcagatgcaagtcgcgatcgacgcg
atccacgaactggtgcgcgaaggaggcaagcccgagtgggactggcagccggccccgaag
aacgaggcgctgatcgcacgcgtgaccgagctggcacagaacgacctgctcgccgcttac
cagctgcgcgacaagcaagcgcgttcggcgaagctgaaggaagtttacgcagcgacctcg
gcgaagctcgaggaagacgcactggcagccggtacggcagcggccgacaaggccaccgtc
ggcaacgtgctgttcgacatcgaagcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgcccgatcgagatccgtaccggcgtg
ctgccgcgtacccacggctcggcgctgttcacgcgcggcgaaacgcaggcgctggtcgtc
gcgacgctcggcacgaagggtgacgagcagatcatcgacgcgctcgaaggcgaataccgc
gagcgcttcatgctccactacaacatgcccccgttcgcgaccggcgaaacgggccgcgtc
ggctcgccgaagcgtcgcgaaatcggccacggccgcctcgcgaagcgcgcgctggtcaag
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggaaatcaccgaa
tcgaacggttcgtcgtcgatggcatcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggtatcgcgatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtcgcgggcaccgagcagggcgtgaccgcgctgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacgtcggcggtttcgggtgcgaacacgcaactgtcggaattcgcgccg
cgcatgatcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgcgcgctgacggaagaaacgggcacgaccatcgacatctcggacgacggc
gtcgtgacgatcgcgagcacgaacagcgacggcatggccgaagcgaagaagcgcatcgag
caaatcacggccgagatcgaagtcggccaggtgtacgaaggcacggttctgaagctgctc
gatttcggcgcgatcgtgaacctgctgccgggcaaggatggcctgctgcacatctcggaa
atcgtcaacgagcgtgtgaaggacatcaacgactacctgaaggaaggccagcaagtgaag
gtcaaggtcatccagacggacgaaaaggggcgcgtgcgcctgtcggcgaaggcgctgctg
aatgaagcagcggcagcggcgcagtcggatacgccgccgcagcagtaa
DBGET
integrated database retrieval system
