Burkholderia cepacia ATCC 25416: APZ15_35020
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Entry
APZ15_35020 CDS
T04772
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APZ15_35020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcep03400
]
APZ15_35020
DNA repair and recombination proteins [BR:
bcep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APZ15_35020
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APZ15_35020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_21
SMC_N
AAA_16
nSTAND1
RsgA_GTPase
AAA_22
AAA_23
AAA_25
AAA_18
NACHT
Viral_helicase1
AAA_33
UvrA_DNA-bind
ATPase
DnaJ_CXXCXGXG
DUF4350
RNA12
Ntox1
YmcF-like
Motif
Other DBs
NCBI-ProteinID:
ALK23094
LinkDB
All DBs
Position
3:617159..623053
Genome browser
AA seq
1964 aa
AA seq
DB search
MSSSNLIRIRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETF
SAYARQFLDRMDRPQVERVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE
LFDRKTARQVRHDTPETIYAELVARTRADDPRVVVTFPVELPETASDEEVAQWLSASGYT
RVQAQREVASPTGPRKVLDVVADRFRVQQADKVRVVEAIEASLKRGGGRVNVYVLAPEAE
NAIAEPQVWRFSTGLHDPDSDLRYAEPQAALFSFNSAYGACETCRGFGRVIGVDLGLVIP
DARKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDTPWAELSDAERDWVVNGSPDWN
GKWQSQWYGVKRFFGYLESKAYKMHIRVLLSKYRSYTPCDVCGGARLKTESLQWRLGSKE
NADGVLAPAGRFMPRGVDWSRAQLEALPGLTVHDLMLLPIERIRRFFDDISLPSALLDDA
LKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLTKTLFVLDEP
SIGLHPRDLTRIVEAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGTIVYDG
TPGDIRSAHTLTGEYLGGRKHVAHASNWARRVVDANTPRIVLEGASEHNLRDVTVEIPLQ
RLVCVTGVSGSGKSTLLQDVLYPAMARHHGKATESPGAYRSLTGADQVGDVVFVDQSPIG
KTTRSNPASYVGAFDEIRKLFAKAPLALQRGYGAGTFSFNSGDGRCPTCGGSGFEHIEMQ
FLSDVYLRCPDCDGSRYRAEILEVRIERDGRALSIADVLDLTVSEAAAFFATDAEVLRVL
QPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAESAAAVNGRRVVTEEARIARAKLFM
FDEPTTGLHFDDIAKLMQAFGKLLAAGHSLIVIEHNLDVIRAADWLIDLGPEGGDGGGLV
LCAGTPDDVKACAASHTGVALLQYERAMDADMALADEGKPLQAVLNAARERRAIEGEDVV
RIVNAREHNLKALDVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYARSI
VQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGLQHCIHDG
TPVTSQSVESIAAQLLRDHRGEHVGLLAPLVVNRKGVYTDLAKWAKARGSTHLRVDGEFV
PVDPWPKLDRFREHTIELPVADIVVSPDNEAELRRVLDETLELGKGVMHLLAPLDGLHDA
MQNDHSTARVGTVKVLSVKRACPVCGTSYPELDPRMFSYNSKHGWCTTCVGTGVTLTREQ
RAAYDDTVLAGDDRGREQTLPSDEQEPEGVGNEPCPDCNGTRLNPTARAVTFDAHPIVEV
AQWTVSDTRRWIDGLELTGRDAQIARDIVSEIGSRLAFLEEVGLGYLSLDRAAPSLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDKGNTLVVVEHDEDTI
RRADHIIDIGPGAGKRGGTLVAEGAVADLAAQPDSVTGRLLAQPMTHPLQPRRSVSLPGK
KGGAAVPEAWLTVHGARLHNLRDVTVGIPLARLVAVTGVSGSGKSTLARDVLMTNLLDAV
GRSVLSSPATRRARKAAQQDTPAANRRSSVLACSAPRPSLNVTHAWQGCESLSGWEQIDR
VLEVDQTPIGKTPRSCPATYIGVWDTIRKLFADTLEARARGYTASRFSFNTGDGRCPACE
GQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGRNIGDVLTMEIDEAVEFFAPIS
NIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDITRRGQKAPHTLYV
LDEPTVGLHMADVAKLIRVLHRLVDAGHSVVVIEHDLDVIAEADWIIDLGPEGGVGGGTI
VAAAPPEALVRVSASHTGQALKPVLARTGAGEGEAEREGEARVG
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatccagcaatctgatccgcattcgcggagcacgtcagcacaacctcaagaacctc
gatctcgacctgcgcaccggcgagatgacggtcgtcaccggcccgtcgggctccggcaag
tcgagcctcgtgttcgacacgctgtacgcggaaggccagcggcgctacgtcgagacgttc
agcgcgtacgcgcggcagttcctcgaccggatggaccgcccgcaggtcgagcgggtcgac
ggcgtgccgcccgcgatcgcgatcgaccagaccaacccggtgcgcagttcgcgctcgacc
gtcggcacgatgaccgagctgaacgatcacctgaagctgctgtacgcgcgcgcggccgag
ctgttcgaccgcaagaccgcgcggcaggtgcggcacgacacgccggagacgatctacgcg
gaactcgtcgcgcgcacgcgggcggacgatccgcgcgtcgtcgtcacgttcccggtcgag
ctgcccgaaacggcgtccgatgaagaagtcgcgcagtggctgtccgcgagcggttacacg
cgggtgcaggcgcagcgcgaggtcgcgtcgcccaccgggccgcgcaaggtgctcgacgtg
gtggccgaccgcttccgcgtgcagcaggccgacaaggtgcgcgtggtcgaggcgatcgag
gcgtcgctgaaacgcggcggcgggcgcgtgaacgtgtacgtgctggcgccggaagcggaa
aacgcgatcgccgagccgcaggtgtggcgcttctccaccgggcttcacgatcccgacagc
gatctgcgctacgcggagccgcaggcggcgctgttctcgttcaattcggcgtacggcgcg
tgcgaaacctgccgcggcttcggccgcgtgatcggcgtcgatctcggcctcgtgattccc
gacgcgcgcaagacgctgcgcggcggcgcgatcaagccgatgcagacgcccgcgtggaag
gagtgtcaggacgacctgatgcgctacgcggcgaaagccggcatcccgcgcgacacgccg
tgggccgagctgtcggacgccgagcgcgactgggtcgtcaacggttcgccggactggaac
ggcaagtggcagagccagtggtacggcgtgaagcgcttcttcggctatctcgagtcgaaa
gcgtacaagatgcatatccgcgtgctgctgtcgaaataccgcagctacacgccgtgcgac
gtgtgcggcggcgcgcgcctgaagacggagtcgctgcagtggcggctcggctcgaaagag
aacgccgacggcgtgctcgcgccggccggccgcttcatgccgcgcggcgtcgactggagc
cgcgcgcagctcgaggcgctgccgggcctgaccgtgcacgacctgatgctgttgccgatc
gagcgtatccgccgcttcttcgacgacatcagcctgccgagcgcgctgctcgacgatgca
ttgaagctgctgctcgccgaagtgcgcacgcgcctgaaatacctgtgcgacgtcgggctc
ggctacctgacgctcgaccggcagagccgcacgctgtcgggcggcgaggtgcagcggatc
aacctgacgacggcgctcggcacgtcgctcacgaaaaccctgttcgtgctcgacgaaccg
agcatcgggctgcatccgcgcgatctcacgcggatcgtcgaggcgatgcagcggctgcgc
gatgcgggcaatacgctggtggtggtcgaacacgatccgtcggtgatgctcgcggccgat
cgcctgatcgacatggggcccggccccggcgagcgcggcggcacgatcgtctacgacggc
acgccgggcgacatccgctccgcgcacacgctgacgggcgagtatctcggcggccgcaag
catgtcgcgcatgcgtcgaactgggcgcgccgggtggtcgacgcgaatacgccgcgcatc
gtgctcgaaggggcgagcgaacacaacctgcgcgacgtgacggtcgagattccgctgcag
cggctcgtctgcgtgacgggcgtgtcggggtccggcaagtccacgctgctgcaggacgtg
ctctatccggcgatggcgcggcaccacggcaaggcgaccgagtcgccgggcgcgtaccgc
agcctcacgggcgccgaccaggtgggcgacgtcgtgttcgtcgaccagtcgccgatcggc
aagaccacccgttcgaacccggcgagctacgtcggcgcgttcgacgagatccgcaagctg
ttcgcgaaggcgccgctcgcgctgcaacgcggctacggcgccggcacgttcagcttcaac
tcgggcgacggccgttgcccgacctgcggcggctcgggcttcgagcacatcgagatgcag
ttcctgagcgacgtctacctgcgctgcccggactgcgacggcagccgctaccgcgcggag
attctcgaagtgcgcatcgagcgcgacggccgcgcgctgagcatcgccgacgtgctcgat
ctcaccgtcagcgaagcagccgcgttcttcgcgaccgacgccgaggtgctgcgcgtgttg
cagccgatcgtcgacgtcggcctcgaatacgtgaagctcggccagccggtgccgacgctg
tcgggcggcgaagcgcagcgcctgaagctggccggcttcctcgccgaatcggcggcggcc
gtgaacggccgccgggtcgtcacggaagaggcgcgcatcgcgcgggcgaagctgttcatg
ttcgacgagccgaccaccgggctgcacttcgacgacatcgcgaagctgatgcaggcgttc
ggcaagctgctcgcggccggccattcgctgatcgtgatcgagcacaacctcgacgtgatc
cgcgcggccgactggctgatcgatctcggcccggaaggcggcgacggcggcggcctcgtg
ctgtgcgcgggcacgcccgacgacgtgaaagcctgcgccgcatcgcataccggcgtggcg
ctgctgcagtacgaacgcgcgatggatgccgacatggcactcgccgacgaaggcaagccg
ctgcaggccgtgctgaacgcggcgcgcgagcggcgtgcgatcgaaggcgaggacgtcgtg
cggatcgtcaacgcgcgcgagcacaacctgaaggcgctcgacgtcgacatcccgcacggc
aagttcaacgtgatcaccggcgtgtcgggttccggcaagtcgacgctcgcgttcgacatc
ctgttccacgaaggccagcgccgttacctcgaatcgctgaacgcgtatgcgcgctcgatc
gtgcagccggccggccgccccgaagtcgacgcggtgtacggcatcccgccgaccgtcgcg
atcgagcagcggctgtcgcgcggcgggcgcaagagcacggtcgcgaccacgtccgaggtg
tggcacttcctgcggctgctgtacgtgaagctcggcctgcagcattgcatccacgacggc
acgccggtcacgtcgcaatccgtcgaatcgatcgccgcgcagttgctgcgcgatcatcgc
ggcgaacacgtcgggctgcttgcgccgctcgtcgtgaaccgcaagggcgtatatacggat
ctcgcgaagtgggcgaaggcgcgcggcagcacgcatctgcgcgtcgacggcgagttcgtg
ccggtcgatccgtggccgaagctcgaccgcttccgcgagcatacgatcgagctgccggtc
gccgatatcgtcgtgtcccccgacaacgaagccgaactgcgacgcgtgctcgacgagacg
ctcgagctcggcaagggcgtgatgcatctgctcgcgccgctcgacgggctgcacgacgcg
atgcagaacgatcattcgaccgcgcgggtcggcacggtcaaggtgctgtcggtcaagcgt
gcgtgcccggtgtgcggcacgagctacccggagctggacccgcggatgttctcgtacaac
agcaagcacggctggtgcacgacctgcgtcggcaccggcgtcacgctcacgcgcgaacag
cgcgccgcgtacgacgacacggtgctcgccggggacgatcgcggccgcgagcagacactg
ccgtcggacgaacaggaaccggaaggcgtcggcaacgagccgtgcccggattgcaacggc
acgcggctgaatccgaccgcgcgggcggtgacgttcgacgcgcatccgatcgtcgaggtc
gcgcaatggacggtgtcggacacgcgccgctggatcgacgggctggagctgacggggcgc
gacgcgcagatcgcgcgcgacatcgtcagcgagatcggcagccgcctcgcgtttctcgag
gaagtcgggctcggctacctgagcctcgatcgcgcggcgccgagcctgtcgggcggcgaa
gcgcagcgcatccggctcgccgcgcagctcggcagcaacctgcagggtgtgtgctacgtg
ctcgacgaaccgacgatcggcctgcatccgcgcgacaaccagatcctgctggatgcgctg
cgcaagctcggcgacaagggcaacacgctcgtcgtcgtcgaacatgacgaggacacgatc
cgccgcgccgatcacatcatcgacatcggcccgggcgcgggcaagcgcggcggcacgctg
gtcgccgagggcgcggtcgccgatctggccgcgcagccggattccgtgacgggccgcctg
ctcgcgcagccgatgacgcatccgctgcagccacgccgcagcgtgagcctgccgggcaag
aagggcggcgcggccgtgccggaagcctggctgaccgtgcacggtgcgcggctgcacaac
ctgcgcgacgtcacggtcggcattccgctcgcgcggctcgtcgcggtcacgggcgtgagc
ggctcgggcaagtcgacgctcgcgcgcgacgtgctgatgacgaacctgctcgacgcggtc
ggccgctcggtgctgtcgtcgccggccacgcgccgcgcgcgcaaggccgcgcagcaggac
acgccggccgccaaccgtcgctcgagcgtgcttgcgtgcagtgcgccgcggccgtcgctg
aacgtcacgcatgcatggcagggctgcgaatcgctgagcggctgggagcagatcgaccgc
gtgctcgaagtcgaccagacgccgatcggcaagacgccgcgctcgtgtccggccacctat
atcggcgtgtgggacacgatccgcaagctgttcgccgatacgctggaagcgcgtgcgcgc
ggctacacggcgtcgcgcttctcgttcaacaccggcgacgggcgttgccccgcatgcgaa
gggcaaggcgtgcgcacgatcggcatgagcttcctgcccgacgtgaaggtgccgtgcgac
gtgtgccacgggcagcgcttcaacccggagacgctcgcggtcacgtggcgcggccggaac
atcggcgacgtgctgacgatggagatcgacgaggcagtggagttttttgcgccgatctcg
aacatcgcgcatccgttgcagctgatgaaggatgtcggcctcggctacctgacgctcggc
cagccgtcgccgacgttgtcgggcggcgaggcgcagcgcatcaagctcgtcaccgagctg
acgaaggtgcgcgacgacatcacgcggcgcggccagaaggcgccgcacacgctgtacgtg
ctcgacgagccgacggtcggcctgcacatggcggacgtcgcgaagctgattcgcgtgctg
caccggctcgtcgatgcggggcacagcgtcgtcgtgatcgagcacgacctcgacgtgatc
gcggaagccgactggatcatcgatctcgggccggaaggcggcgtgggcggcggcacgatc
gtcgcggcggcgccgccggaagcgctcgtgcgggtgagcgcgagccatacggggcaggcg
ctcaagccggtgctcgcgcgaacgggcgcgggcgaaggggaagccgagcgcgagggagaa
gcgcgggtagggtga
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integrated database retrieval system
